PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676741102
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 476aa    MW: 54135.4 Da    PI: 4.3658
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676741102genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.31.4e-1314104194
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                ffkv +p d++    l +p +f  ++ ++k  +k +t+++  g+ W+++l+   ++ +++ l +GWk+ vk+ +Lk g+f+ F++dg++ f++++
  676741102  14 FFKVYLPDDSGD--DLEIPISFN-RC-LPKSLPKNVTVRSIYGNIWKLELRKcYGYVEKFSLVDGWKKIVKDEDLKGGEFLAFEFDGSRHFNFCI 104
                788886666554..59******8.55.45679999***************555566666*************************99988885443 PP
2B344.13.6e-14218308196
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                ffkv +p d++    l +p +f  ++  ++    +k +++++  g++W++kl+ r+++ + y + +GWk+ vk+ +Lk g+f+ F++dg++ f  ++ +
  676741102 218 FFKVYLPDDSGD--DLEIPISFN-SClpSS---VPKNVIVRSIYGNVWKLKLRKRGGDTEkYAMVDGWKRIVKDEDLKGGEFLAFEFDGSRLF--NFCI 308
                788886666554..599*****8.664433...4568***************665544448*************************9986666..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.84E-198110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-169107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.74412108IPR003340B3 DNA binding domain
CDDcd100172.48E-1512105No hitNo description
PfamPF023622.9E-1114104IPR003340B3 DNA binding domain
SMARTSM010191.7E-1414108IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-18213314IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-17215312IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.196216312IPR003340B3 DNA binding domain
CDDcd100172.73E-15216310No hitNo description
PfamPF023628.1E-12218309IPR003340B3 DNA binding domain
SMARTSM010194.1E-17218312IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-12372470IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-9372469IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.287376472IPR003340B3 DNA binding domain
SMARTSM010190.96379472IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDKGDSQDDC YPKFFKVYLP DDSGDDLEIP ISFNRCLPKS LPKNVTVRSI YGNIWKLELR  60
KCYGYVEKFS LVDGWKKIVK DEDLKGGEFL AFEFDGSRHF NFCIYGHATC KRLGSSVKTK  120
EIKDESESDC GKSIVDIIII DDDDDDDDDD QDPGDEDKSS EDIIRRSGVE TEKSTDKMIC  180
ELEKENNGLE QAQKQSANLC SPIVSYKRDS TNGCLPKFFK VYLPDDSGDD LEIPISFNSC  240
LPSSVPKNVI VRSIYGNVWK LKLRKRGGDT EKYAMVDGWK RIVKDEDLKG GEFLAFEFDG  300
SRLFNFCIYD QATCKRLGHS AETKESDGED DVIVIDDDDN DQDYIDDDDD DESLDVDDDF  360
EADDDDHRQN LDDPDNPSFT VILNPKKKSQ LLIPTHVVKD YNLTFPERVT VVDPLVTKFG  420
AWEKQIKIQD NGCVFVKGFG SVFRRNNVKT TDKMICELKK SGSDLVHTIK VYIVRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-1343141104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676741102
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612534.11e-121PREDICTED: B3 domain-containing protein At5g60130-like isoform X2
RefseqXP_013713842.11e-121B3 domain-containing protein At5g60130-like isoform X2
SwissprotQ9LVG11e-95Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLA0A0D3ECZ61e-120A0A0D3ECZ6_BRAOL; Uncharacterized protein
STRINGBo9g141110.11e-121(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.11e-57B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]