PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676741680
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 333aa    MW: 38316.5 Da    PI: 7.8907
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676741680genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002235258123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                y+Cp+C+ ++ ++  +  Hi++ H
  676741680 235 YTCPKCKNVYDTSQKFAAHISSiH 258
                9*******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280237258IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSSIPNGFNS YGDDTMNLRG SIPILMNSSI RDREIQMIRS MFDTPDVTNH HGLFSSSHAS  60
QLSLSSFGFN NSHVAYQMRT DTVSNVVDYF PINDSPHLSQ VSITQTITKR YSAIVPTSSL  120
ITVQNEYERA MNPNISNLSF YPQNFVDKQS GILNPTPLNT IFPHQNSVFP RNLDLFSFSP  180
NHHHDQHVFP HRRQAIKRPN PTKRFEEIFD DFDFERNGEY DGRTHSLPYE KYGPYTCPKC  240
KNVYDTSQKF AAHISSIHYK NETVEERAKR YNARNKKRFR KTNETTLGES HQKIQPGDRA  300
VEESRGSSNN ASGVEAFQHH LIVKEEPIYY VVD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00523DAPTransfer from AT5G22990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676741680
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400809.11e-166uncharacterized protein LOC18016575
TrEMBLV4LIK21e-164V4LIK2_EUTSA; Uncharacterized protein
STRINGXP_006400809.11e-165(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.13e-97C2H2-like zinc finger protein