PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676742084
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 287aa    MW: 31878.2 Da    PI: 8.5825
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676742084genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.91.9e-06259281223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +Cp+C++ F+++ +L++Hi + H
  676742084 259 VCPKCSRGFRDPVDLVNHIERdH 281
                7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183105.23E-12457No hitNo description
PROSITE profilePS510397.8261056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.9E-101152IPR000058Zinc finger, AN1-type
SMARTSM001543.2E-61352IPR000058Zinc finger, AN1-type
PfamPF014282.5E-131349IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.8E-1091145IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.06E-993144No hitNo description
PROSITE profilePS510398.02298151IPR000058Zinc finger, AN1-type
SMARTSM001540.006101142IPR000058Zinc finger, AN1-type
PfamPF014287.9E-8101140IPR000058Zinc finger, AN1-type
SMARTSM003550.043221244IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.91221249IPR007087Zinc finger, C2H2
PROSITE patternPS000280223244IPR007087Zinc finger, C2H2
PfamPF056052.3E-6223282IPR008598Drought induced 19 protein type, zinc-binding domain
Gene3DG3DSA:3.30.160.606.8E-4225244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.9258281IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954258286IPR007087Zinc finger, C2H2
PROSITE patternPS000280260281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDICKQ IDFLPFTCDR CLQVFCLDHR SYMKHSCPKG DREDVTVVIC  60
PLCAKGVRLN PNEDPNITWE KHVNTDCDPS NYEKATKKKK CPVPRCKEQL TFSNTIKCRV  120
CNIDHCLKHR FGPDHTCPGP RKPEPTFPFM GFLTSTSTGS ASRKEAKTTR HSKAPASTSS  180
SSSSSRWSNL LSSAEAGISR LGNDISQKLQ FSSSSNDGIV EVCPQCGAKF SSVAVLVEHV  240
EKTHERNKKQ NHGKVTVDVC PKCSRGFRDP VDLVNHIERD HRGTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676742084
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505969.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-177SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A1J3INK21e-179A0A1J3INK2_NOCCA; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
STRINGXP_010505969.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-177C2H2 family protein