PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676742278

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

LBD

Protein Properties

Length: 196aa MW: 22204.7 Da PI: 6.7814

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676742278	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.2	5.6e-38	5	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC ++Cv+ap f+++q +++fa++h++FGasn +kll++lp e+r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+a+l+ lk+ 676742278 5 PCGACKFLRRKCIHGCVFAPFFCHDQgASHFAAIHQVFGASNASKLLSHLPMEDRCEAAITIYYEAQARLQDPIYGCVSHIFSLQQQVVNLQAQLEILKQ 104 7***********************89*******************************************************************999 PP DUF260 100 e 100 + 676742278 105 Q 105 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.592	4	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-35	5	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MTGSPCGACK FLRRKCIHGC VFAPFFCHDQ GASHFAAIHQ VFGASNASKL LSHLPMEDRC 60 EAAITIYYEA QARLQDPIYG CVSHIFSLQQ QVVNLQAQLE ILKQQATQSM MATDSPSTDN 120 RNYYRDTKLQ QLQQSLDLHR HHNNHQDRSL ETESNSELKN IMASYSELDQ HFNTFNQYHN 180 GGNDILSANV GYISYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-33	3	100	9	105	LOB family transfactor Ramosa2.1
5ly0_B	4e-33	3	100	9	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676742278

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013690686.1	1e-121	LOB domain-containing protein 17-like
Refseq	XP_013747423.1	1e-121	LOB domain-containing protein 17-like
Swissprot	Q9SLB6	6e-96	LBD17_ARATH; LOB domain-containing protein 17
TrEMBL	A0A078FPN0	1e-120	A0A078FPN0_BRANA; BnaC04g48290D protein
STRING	Bo4g191540.1	1e-119	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	2e-88	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]