PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676742804
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family AP2
Protein Properties Length: 321aa    MW: 36551.1 Da    PI: 7.8126
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676742804genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-1249105155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  s+n  ++k+ + g ++ +e Aa+a++ a++k++g
  676742804  49 SSYRGVTRHRWTGRYEAHLWDkNSWNEtQTKKGRQGAYDEEEAAARAYDLAALKYWG 105
                67*******************88889998888888********************98 PP
2AP253.94.4e-17148199155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  676742804 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAARAYDIAAIEYRG 199
                89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.84E-1549114IPR016177DNA-binding domain
PfamPF008475.4E-949105IPR001471AP2/ERF domain
PROSITE profilePS5103219.17750113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-1350113IPR001471AP2/ERF domain
SMARTSM003807.6E-2150119IPR001471AP2/ERF domain
PRINTSPR003673.6E-65162IPR001471AP2/ERF domain
CDDcd000185.42E-25148209No hitNo description
PfamPF008471.6E-12148199IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-18148209IPR016177DNA-binding domain
PROSITE profilePS5103218.874149207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18149208IPR001471AP2/ERF domain
SMARTSM003803.4E-26149213IPR001471AP2/ERF domain
PRINTSPR003673.6E-6189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAKVSQLSKK VIEDETITDK RATTSPPVVF KSKRKRKSQP QNGPPQRSSS YRGVTRHRWT  60
GRYEAHLWDK NSWNETQTKK GRQGAYDEEE AAARAYDLAA LKYWGRDTLL NFPLPTYEED  120
VKEMEGHSKE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY  180
ATQEEAARAY DIAAIEYRGL NAVTNFDVSR YLDLTASKVA ANHLPNEAHT DSKPTRNTSH  240
ESRSQDDQTS SDDNDFSKTE DIIEPSTPPE AIPSRRSFPD DIQTYFGCQD SGKLATEEDV  300
IFGGFNSYIN PGFYNDFDYG P
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676742804
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527860.0AK352786.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010035.10.0AP2-like ethylene-responsive transcription factor At1g79700 isoform X1
SwissprotA0JPZ81e-150AP2L3_ARATH; AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A1J3CZN20.0A0A1J3CZN2_NOCCA; AP2-like ethylene-responsive transcription factor
TrEMBLE4MW890.0E4MW89_EUTHA; mRNA, clone: RTFL01-07-M17
STRINGXP_006389858.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-152AP2 family protein