PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676742832

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Protein Properties

Length: 274aa MW: 31238.3 Da PI: 9.3845

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676742832	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.9	2.9e-16	138	227	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v+ +l lp++f+ +h + + ++tl de+ ++ k+ ++++ l++GW++F+ +++L +gD vvF+l++ ++f +v+++r 676742832 138 FVKPMLQSHVTGGFWLGLPRQFCMTHLPQ--HDEMITLVDENDEESVTKY--LAGKNG--LSGGWRGFAIDHQLVDGDAVVFHLINPTTF--KVHIIR 227 89*******************999433..4458******999..555555..9***********************986777..888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.3E-21	129	227	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-25	131	227	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.73E-26	136	227	No hit	No description
PROSITE profile	PS50863	10.856	138	229	IPR003340	B3 DNA binding domain
SMART	SM01019	1.4E-21	138	229	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-14	138	227	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MVESELSYEH IRLNRLEENK KRMVELNLHK LSQSLRVSSS SKPSPAKPRT LRIPVDLSEV 60 RRSCRAKNPP PSYREIGPET LERPRRLTTP RLCTSNHTWS YQKRDLLNRV YASDHARVSA 120 IDRAETLQSS LEPDFPSFVK PMLQSHVTGG FWLGLPRQFC MTHLPQHDEM ITLVDENDEE 180 SVTKYLAGKN GLSGGWRGFA IDHQLVDGDA VVFHLINPTT FKVHIIRVYD ESNNDSGGNN 240 CEELGTKSNK NQEENVLEAI QLPSSGKRKR KGRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676742832

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189312	3e-70	AC189312.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034L08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013588441.1	1e-134	PREDICTED: B3 domain-containing protein At3g19184
Refseq	XP_013726982.1	1e-134	B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	1e-122	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A397YT92	1e-135	A0A397YT92_BRACM; Uncharacterized protein
STRING	Bostr.19424s0744.1.p	1e-138	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-102	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]