PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676742866
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 349aa    MW: 39518.4 Da    PI: 8.9295
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676742866genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.33.5e-283498155
    G2-like  1 kprlrWtpeLHerFveaveqLGGse..........kAtPktilelmkvkgLtlehvkSHLQkYRl 55
               kprlrWt eLHerFv+av+qLGG++          +AtPkti+++m+vkgLtl+h+kSHLQk+Rl
  676742866 34 KPRLRWTVELHERFVDAVAQLGGPDsmltykyxltEATPKTIMRVMGVKGLTLYHLKSHLQKFRL 98
               79*********************9744444444446****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-293199IPR009057Homeodomain-like
SuperFamilySSF466891.51E-133399IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-183499IPR006447Myb domain, plants
PfamPF002492.3E-73696IPR001005SANT/Myb domain
PfamPF143792.8E-22147188IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010088Biological Processphloem development
GO:0010089Biological Processxylem development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MFHAKKPSSM NGSYENRAMC VQGDSGLVLT TDPKPRLRWT VELHERFVDA VAQLGGPDSM  60
LTYKYXLTEA TPKTIMRVMG VKGLTLYHLK SHLQKFRLGK QPHKEYGDHT TKEGSRASAM  120
EIQRNVASSS GMMSRNMNDN LHLVYLIRMQ MEVQRRLHEQ LEVQRHLQLR IEAQGKYMQS  180
ILERACQTLA AVGPPPHPLS FPPFQDLNIY GNTTDQVLDH HNFHHQNIEN HYTANNAADT  240
NIYLGKKRPN PSFSNDVRKG LLMWSDQDHD LSGNQPIDDE HRIQIQMATH VSTDLDSLSE  300
IYERKSGLSG DEGNNGGKLL ERPSPRRSPL SPMMNPNGGL IQGRNSPFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-1534100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1534100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1534100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1534100157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676742866
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892090.0AC189209.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB007M04, complete sequence.
GenBankAC1893120.0AC189312.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034L08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013726973.10.0myb family transcription factor APL
SwissprotQ9SAK50.0APL_ARATH; Myb family transcription factor APL
TrEMBLA0A1J3CI770.0A0A1J3CI77_NOCCA; Myb family transcription factor APL
STRINGBo6g123880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50442750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.20.0G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]