PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743310
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 140aa    MW: 15685.9 Da    PI: 7.9445
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743310genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.8e-1790138153
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                +++kGVr ++ +g+W AeI+dps    + r++lg+f ta++Aa+ ++ a+ kl
  676743310  90 KKHKGVRKRP-SGKWSAEIWDPSL---KVRVWLGTFPTAKMAARVYDDAAAKL 138
                589*******.7*********943...5**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.7E-2091140IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1591138IPR016177DNA-binding domain
PfamPF008472.1E-991138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2091138IPR001471AP2/ERF domain
PROSITE profilePS5103218.84891140IPR001471AP2/ERF domain
PRINTSPR003672.5E-792103IPR001471AP2/ERF domain
CDDcd000181.16E-2394138No hitNo description
PRINTSPR003672.5E-7114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MNDSENVPSY DPKPPYLTRD QEHGIMVSAL RQVIFNVGSD TASSSNWNAY EALQPMDAGP  60
CPLCSVTGCY GCVFPLHEEI KKEKEEKKEK KHKGVRKRPS GKWSAEIWDP SLKVRVWLGT  120
FPTAKMAARV YDDAAAKLVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18098KKEKEEKKEKKHKGVRKRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450170.12e-68PREDICTED: putative ethylene-responsive transcription factor ERF121
SwissprotQ9SK671e-58EF120_ARATH; Ethylene-responsive transcription factor ERF120
TrEMBLA0A397L4F03e-65A0A397L4F0_BRACM; Uncharacterized protein
STRINGBra019087.1-P9e-66(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20350.15e-52ERF family protein