PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743466
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family LBD
Protein Properties Length: 221aa    MW: 24020 Da    PI: 5.0629
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743466genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.13e-38111111100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+++Cv+apyf +e+ +++fa+vhk+FGasn +kll  +p ++r +a+ +l yeA ar+rdPvyG+vg+i++lq+q+++l+aela++++
  676743466  11 PCGACKFLRRKCVAECVFAPYFDSEEgTARFAAVHKVFGASNASKLLLMIPASRRLEAVVTLSYEALARLRDPVYGCVGHIFALQHQVMNLQAELATVQT 110
                7*********************998879*********************************************************************998 PP

     DUF260 100 e 100
                +
  676743466 111 H 111
                6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.45210112IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-3711109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSGSTTGIGS PCGACKFLRR KCVAECVFAP YFDSEEGTAR FAAVHKVFGA SNASKLLLMI  60
PASRRLEAVV TLSYEALARL RDPVYGCVGH IFALQHQVMN LQAELATVQT HLSTLQRLPP  120
PPKQQNNSQT EAASSTKAPL IASVDNNDND NNNVSSSLLH IHGMSQEQPQ EDIEVPTESV  180
DFSTLLGLED PLDEDGDLNT LAREFVSKYL TEGKYRPSSP I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3841124111LOB family transfactor Ramosa2.1
5ly0_B2e-3841124111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743466
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465751.11e-131PREDICTED: LOB domain-containing protein 31 isoform X2
SwissprotO813221e-118LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A078JPX11e-127A0A078JPX1_BRANA; BnaUnng02520D protein
TrEMBLA0A291LR221e-127A0A291LR22_BRARR; Transcription factor LBD31
TrEMBLA0A3P5XT751e-127A0A3P5XT75_BRACM; Uncharacterized protein
TrEMBLM4F8B01e-127M4F8B0_BRARP; Uncharacterized protein
STRINGBra037322.1-P1e-128(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-103LOB domain-containing protein 31