PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743476
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 489aa    MW: 53653.1 Da    PI: 5.6711
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743476genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.42.5e-8916048635374
       GRAS  35 gdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLas 134
                 +p++R+a+yf+eAL++ l++         ++++ ++++ + ++aa+k fse+sP+l+f+++t Nqa+le+++g +r+HiiDfd+++G+QW++L+q+L  
  676743476 160 HSPFERAAFYFKEALHSCLLH--------NASQTLNPYSLIFKIAAYKSFSEISPVLQFANFTSNQALLESFHGFHRLHIIDFDLGYGGQWASLMQELVL 251
                5799****************9........45666677789************************************************************ PP

       GRAS 135 Rp......egpp..slRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleser 224
                R+      +  p  sl++T+++sp ++ ++ el  t+++L++fA+e++++++++vl   +l+ l +++  + +++Ea+aVnl+ + ++       ++s+ 
  676743476 252 RDsnssdaA--PalSLKLTVFASPGAThDQLELGFTQDNLKHFASEINISLDIQVL---SLDLLgSVSWPNPSEKEAVAVNLSPSSFSN------MPSYL 340
                *97665422..3359********98888***************************9...555552233335567********9976665......47888 PP

       GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                + vL++vk+lsP++vv++++ +++++ +F +++l++l+ ++al++sl+a   ++ ++++k+Er+l+++ei+++v  + +     ++ +++W++++ ++GF
  676743476 341 PLVLRFVKHLSPTIVVCSDRGCERTDLPFPQQLLHSLHSHAALLESLDAV-NANLDAMQKIERFLIQPEIEKLVVDRSRP---SQRPMMTWQAMFLQMGF 436
                89*********************************************887.56779********************9998...77889************ PP

       GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                +pv+ s+++++qa++l+++++++g++ve++++sl+l+W++r+Lv vSaWr
  676743476 437 SPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRRELVGVSAWR 486
                *************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.28394466IPR005202Transcription factor GRAS
PfamPF035148.6E-87160486IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MPLAFEEFQG KGISYFSSFP SPSSEKEPTS VLSPLTTSSS TVSSSHGGNS AVGGGGISTA  60
ISGGDATTDE QCGPTGLGDW EQVLPASPTH DHDHDHDHDH DQSILRLIMM GDSQDPSLEL  120
NNILQTSSSS QSPASFHHSS DYTSLGGFGV VDTPGFGLDH SPFERAAFYF KEALHSCLLH  180
NASQTLNPYS LIFKIAAYKS FSEISPVLQF ANFTSNQALL ESFHGFHRLH IIDFDLGYGG  240
QWASLMQELV LRDSNSSDAA PALSLKLTVF ASPGATHDQL ELGFTQDNLK HFASEINISL  300
DIQVLSLDLL GSVSWPNPSE KEAVAVNLSP SSFSNMPSYL PLVLRFVKHL SPTIVVCSDR  360
GCERTDLPFP QQLLHSLHSH AALLESLDAV NANLDAMQKI ERFLIQPEIE KLVVDRSRPS  420
QRPMMTWQAM FLQMGFSPVT HSNFTESQAE CLVQRTPVRG FHVEKKHNSL LLCWQRRELV  480
GVSAWRCRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2516248639375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743476
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426616.10.0PREDICTED: scarecrow-like protein 6
RefseqXP_019088531.10.0PREDICTED: scarecrow-like protein 6
SwissprotO813160.0SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A1J3D2L80.0A0A1J3D2L8_NOCCA; Scarecrow-like protein 6
STRINGBostr.14547s0023.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.10.0GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]