PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743514
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 420aa    MW: 47579.9 Da    PI: 6.3606
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743514genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.83.5e-3971363128
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                +G+rF+Ptd+el++++L +k++gk+  +++ ike++i+++ P++Lp  +++k+++ ewyfFs+ +   +++k ++r+t sg+Wk tg d++++++  +g 
  676743514   7 VGYRFRPTDKELINYFLMNKIQGKSWLVDKDIKEINICDFRPESLPslSNIKSKDLEWYFFSPIEFLPTKKKVTKRTTLSGFWKPTGVDRKIKDRarNGV 106
                7************************999788***************5448888888*********9999999*********************9988888 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                ++g kktLvf++g++ +g +t W+mhey++
  676743514 107 EIGSKKTLVFHEGKSANGLRTPWIMHEYHV 136
                9***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100543.3095155IPR003441NAC domain
SuperFamilySSF1019412.22E-446155IPR003441NAC domain
PfamPF023651.3E-227136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MKTPNMVGYR FRPTDKELIN YFLMNKIQGK SWLVDKDIKE INICDFRPES LPSLSNIKSK  60
DLEWYFFSPI EFLPTKKKVT KRTTLSGFWK PTGVDRKIKD RARNGVEIGS KKTLVFHEGK  120
SANGLRTPWI MHEYHVSSKL LNDQRPYVIC KVMYKGQDGD RFTGNISNEL SQSNVIDWLN  180
TSPEVGQVDQ QDNSRLSLDD LLTPTNQQQQ ALSSFDGDIV FSNNNDNPYV QPQSPGDDEF  240
RLWLEFNGGN FEDVIPSPEF TQHTHYNNHM PKKPSTWSIP YYSDTDDSSS DSDAESISAT  300
SYQGLSSTGD SDGSSSRPFH TSEDEIPSLS IDSCKDVTTS AETSIDRKTN ESHFTRRTAP  360
SKQEVKQGKS KAVDASVDKK SSSSMVKTEE AMQRNRKNPP YIHFMNMIID FVNLVGGGCH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-21813618140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743514
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731186.11e-143NAC domain-containing protein 69-like
SwissprotQ9M1261e-120NAC69_ARATH; NAC domain-containing protein 69
TrEMBLM4CWF61e-142M4CWF6_BRARP; Uncharacterized protein
STRINGBra008553.1-P1e-143(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-100NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]