PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743528
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 340aa    MW: 39062.1 Da    PI: 7.2283
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743528genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.82.8e-3036123186
                EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                f+kvltpsdv+k++rlv+pk++ae++   + + ++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L+ gD+v F++ +
  676743528  36 FDKVLTPSDVGKLNRLVIPKQHAENYfplEDN-QNGTVLDFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKNLDNGDTVSFHRGN 123
                89*********************999**7444.46789***********************************************9644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-3832128IPR015300DNA-binding pseudobarrel domain
CDDcd100174.54E-2734121No hitNo description
SuperFamilySSF1019368.5E-3034122IPR015300DNA-binding pseudobarrel domain
PfamPF023623.0E-2736124IPR003340B3 DNA binding domain
SMARTSM010192.9E-2336136IPR003340B3 DNA binding domain
PROSITE profilePS5086314.11336142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSSDQGPTEN GASGSGNNNN NNNINYFNSG MREHMFDKVL TPSDVGKLNR LVIPKQHAEN  60
YFPLEDNQNG TVLDFQDRNG KMWRFRYSYW NSSQSYVMTK GWSRFVKEKN LDNGDTVSFH  120
RGNVPDDNEP EKRRKILFID WRHRADMNLI HNINHHHYPL FGSATYPTTA EYYPLTEYSM  180
PQHYRRFPPF YHNQTQEREL LGYGYGNYGG RYYAGVPLDH HQWNLGRSEP LVYDSYPVFP  240
TTRVVPSSAM LPPSPPSQRM QEGTVKKLRL FGVDVEESSS SGDTRGEMGV AGHSPSSPVV  300
IRDDESSWRS PRGEMGTSSS SVMQLSDDEE YKRKGKSLQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-48321444113B3 domain-containing transcription factor NGA1
5os9_B6e-48321444113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00424DAPTransfer from AT4G01500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743528
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469605.11e-176PREDICTED: B3 domain-containing transcription factor NGA4-like
SwissprotO825951e-167NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLA0A3P6AVI81e-174A0A3P6AVI8_BRACM; Uncharacterized protein
STRINGBostr.7365s0004.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-153B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]