PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743638
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 402aa    MW: 44219.1 Da    PI: 6.6853
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743638genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.71.1e-22273336164
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                eke+kre+rkq+NRe+ArrsR+RK+ae+eeL  kv++L aeN++L+++l +l++e++kl+ e+e
  676743638 273 EKEVKREKRKQSNRESARRSRLRKQAETEELSVKVDALVAENMTLRSKLGQLNEESEKLRLENE 336
                89*********************************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.6E-31196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.2E-8130184No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-15269332No hitNo description
SMARTSM003382.9E-20273337IPR004827Basic-leucine zipper domain
PfamPF001702.3E-21273335IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.863275338IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.63E-10276332No hitNo description
CDDcd147024.49E-20278327No hitNo description
PROSITE patternPS000360280295IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSSNEEGKST KSDKTAQAAA APVEQSNVHV YHHDWAAMQA YYGPRVAIPQ YYNSNVAPGH  60
APPPYMWGSP SPMMAPYGAP YPPFCPPGGV YAHPGVQMGS QTQGPVSQAT AVATTPLNLE  120
APANSPGNTD QGFMKKLKEF DGLAMSISNN KVGSAEHSSE PRNSQSSEND DSSNGSDGNT  180
TGVRTPFFSE LVGEQSRRKR SREGSPANER RHPKYFWDSM FITTEDGKPS SQITPLLRDE  240
NEKPVAAMGT PVMPTGMDFP QPCHGAPHEV WNEKEVKREK RKQSNRESAR RSRLRKQAET  300
EELSVKVDAL VAENMTLRSK LGQLNEESEK LRLENEALLE QLKAAQTQAT GKTENLISRV  360
DKNNSVSSSK NVEQQLLHIY SSLQCEAETD VISLKQERFS VV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289295RRSRLRK
2289296RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743638
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY169531e-179Y16953.1 Sinapis alba mRNA for G-box binding factor 2A.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396298.10.0G-box-binding factor 2
SwissprotP427751e-174GBF2_ARATH; G-box-binding factor 2
TrEMBLV4MYT20.0V4MYT2_EUTSA; Uncharacterized protein
STRINGXP_006396298.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.11e-134G-box binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li B, et al.
    Promoter-based integration in plant defense regulation.
    Plant Physiol., 2014. 166(4): p. 1803-20
    [PMID:25352272]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]