PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743836
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family DBB
Protein Properties Length: 183aa    MW: 19933.5 Da    PI: 6.1415
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743836genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.5e-07433534
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                C+ +e+  ++ fC  ++  lC+ C ++ H
  676743836  4 LCDACENAAAIVFCAADEAALCRACDEKVH 33
               6*******9******************998 PP
2zf-B_box279.4e-095291237
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
               ++++C+ +e+ ++ +fCe +++ lC +C +  H g    H
  676743836 52 NAPCCDICENAPAFFFCEIDGSSLCLQCDMVVHVGgkrtH 91
               789***************************9996555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.338147IPR000315B-box-type zinc finger
CDDcd000211.54E-6345No hitNo description
PfamPF006436.5E-6442IPR000315B-box-type zinc finger
SMARTSM003364.6E-7447IPR000315B-box-type zinc finger
SMARTSM003362.0E-125196IPR000315B-box-type zinc finger
PROSITE profilePS501198.935196IPR000315B-box-type zinc finger
PfamPF006431.5E-65291IPR000315B-box-type zinc finger
CDDcd000211.44E-75696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MRILCDACEN AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE  60
NAPAFFFCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR IEFPGDKPKP NSTRDSLQNH  120
RVSANANGEA NGKLDDEMID LNANPQRVHE PASNNQGIDV NNANNHEPAG VVPVGPFKRE  180
PEK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743836
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528900.0AK352890.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-L04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411690.11e-126B-box zinc finger protein 19 isoform X1
RefseqXP_024005456.11e-126B-box zinc finger protein 19 isoform X1
SwissprotC0SVM51e-124BBX19_ARATH; B-box zinc finger protein 19
TrEMBLV4MKE71e-124V4MKE7_EUTSA; Uncharacterized protein
STRINGXP_006411690.11e-125(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-126DBB family protein