PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743844
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family BBR-BPC
Protein Properties Length: 338aa    MW: 37915.2 Da    PI: 9.4597
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743844genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind317.34.7e-97443381301
  GAGA_bind   1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkl 81 
                m++ g++e  r k+ yy+                ++++l   +++++ms++aerda+++ern a+++kk+a+a+rd+a+ qrdkal+er++a++er+++l
  676743844  44 MESGGQYEngRYKPdYYKgtqsvwnmmpqhqikeQHNALV--MNKKIMSILAERDAAVKERNEAVAAKKEALAARDEALEQRDKALSERDNAIMERESAL 141
                888999888999999999*********9887765446666..99******************************************************** PP

  GAGA_bind  82 lalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkke 181
                 al+++e++l+  l       s +k  +s        l+      +e++  +  p+++ ++ea +++++k   r+k  k+++++k+kk +e+ +++v+++
  676743844 142 SALQYRETNLNYIL-------SCAKRGNSQSC-----LT------EESNLPNPSPLSTIPHEAANTTSTK---RKKASKQETRSKVKKVGEDLNRQVASP 220
                ********955433.......33333332222.....11......2222234556666666666655555...566778888889999999********* PP

  GAGA_bind 182 saderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
                +  ++ +++++s d++ln v++De+t+PvP+C+CtG+ rqCYkWGnGGWqS+CCttt+S yPLP+++++r++R++grKmS+++f++lL +La+eG++ls 
  676743844 221 G--KKCRKDWDSNDVGLNLVTFDETTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSEYPLPQMPNKRHSRMGGRKMSGNVFSRLLTRLAGEGHELSS 318
                *..56*********************************************************************************************** PP

  GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
                pvDLkd+WA+HGtn+++ti+
  676743844 319 PVDLKDYWARHGTNRYITIK 338
                *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.5E-16144338IPR010409GAGA-binding transcriptional activator
PfamPF062173.5E-9261338IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MPISIELSSS HFPPPSLPLC PRDLSQFPLL VSPTKILFSI LSLMESGGQY ENGRYKPDYY  60
KGTQSVWNMM PQHQIKEQHN ALVMNKKIMS ILAERDAAVK ERNEAVAAKK EALAARDEAL  120
EQRDKALSER DNAIMERESA LSALQYRETN LNYILSCAKR GNSQSCLTEE SNLPNPSPLS  180
TIPHEAANTT STKRKKASKQ ETRSKVKKVG EDLNRQVASP GKKCRKDWDS NDVGLNLVTF  240
DETTMPVPMC TCTGTARQCY KWGNGGWQSS CCTTTLSEYP LPQMPNKRHS RMGGRKMSGN  300
VFSRLLTRLA GEGHELSSPV DLKDYWARHG TNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00480DAPTransfer from AT4G38910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743844
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6336030.0EF633603.1 Cardamine pratensis GAGA-motif binding transcriptional activator (BBR/BPC5) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411681.10.0protein BASIC PENTACYSTEINE5
RefseqXP_024005542.10.0protein BASIC PENTACYSTEINE5
RefseqXP_024005543.10.0protein BASIC PENTACYSTEINE5
RefseqXP_024005544.10.0protein BASIC PENTACYSTEINE5
SwissprotF4JUI30.0BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLV4M9X70.0V4M9X7_EUTSA; Uncharacterized protein
STRINGXP_006411681.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.21e-172basic pentacysteine 5