PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676744118
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 101aa    MW: 11425.7 Da    PI: 9.1351
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676744118genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.9e-091257245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     g+WT+   + + +a + +  +   +W+ +a+ +g g+t +++k ++ 
        676744118 12 GSWTAKQNKAFEKALATYDQDtpnRWHNVAQVVG-GKTTEEVKRHYE 57
                     89*****************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.002964IPR017884SANT domain
SMARTSM007171.9E-81062IPR001005SANT/Myb domain
PfamPF002495.8E-71257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-51366IPR009057Homeodomain-like
SuperFamilySSF466891.05E-121367IPR009057Homeodomain-like
CDDcd001675.18E-71460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MASTSMSSHS SGSWTAKQNK AFEKALATYD QDTPNRWHNV AQVVGGKTTE EVKRHYELLV  60
QDINSIENGH IPFPNYNNSS GGCTNGRLIQ EEKRMRNMRL Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-351101193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676744118
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895212e-88AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.
GenBankAC1896352e-88AC189635.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004J05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195636.26e-56RAD-like 1
SwissprotF4JVB86e-57RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A087GKU91e-54A0A087GKU9_ARAAL; Uncharacterized protein
STRINGA0A087GKU92e-55(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.16e-58RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]