PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676744406
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 553aa    MW: 61215 Da    PI: 7.5014
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676744406genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.51e-17290339255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  676744406 290 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 339
                889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.6E-23287358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.225288338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-19289357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-15290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-14290341No hitNo description
SMARTSM003535.4E-13294344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MELPQPRPFK AQGRKPTHDF LSLCSHSTLQ PDPKPTPSSQ EILMKHGAGS HLKTHDFLQP  60
LECVGAKEEI SRVDASRTAS EKPPPPAPPP PLQHVLPGGI GTYTISPIPY FHNNHQRIPK  120
PELSPPMMFT AAAQAGGGNE RNVVDENSNS NCSSYAVAAS GFTLWDESGS GKKGQTRKEN  180
NTGERASVRA DVATTMGQWP VVERRSQSLT NNPLSGFSSR SSSQGSGHKS QSFMDMIRSA  240
KGTSQDDDLD DEEDFIMKKE SSSTSQLHRD LRVKADARGA GNDQKLNTPR SKHSATEQRR  300
RSKINDRFQM LRQLIPNSDQ KRDKASFLLE VIEYIQFLQE KTNKYETPYQ GWTPEPTKLL  360
NWQRNNQQLV PEGTSAFAPK LEEEKNNIPV PVLATAQGVV IDHLDTLNRV TPTTSPFPLS  420
VQSNSFFSPV IAGNPVTQLH TRVSSSETVE PNPSSRSHTQ PLKEEEEGDD EEVHEGNISI  480
SSVYSQGLVK TLREALENSG VDLTKASISV EIELAKQSSS FKDNEIRELV SRTGNDDVKQ  540
TRKPKRLKTN NRS
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676744406
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533130.0AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399300.10.0transcription factor BIM1 isoform X1
SwissprotQ9LEZ30.0BIM1_ARATH; Transcription factor BIM1
TrEMBLV4LLR00.0V4LLR0_EUTSA; Uncharacterized protein
STRINGXP_006399300.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.40.0bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]