PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676744504
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family AP2
Protein Properties Length: 242aa    MW: 28111.7 Da    PI: 9.7882
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676744504genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.85e-17140189155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k++++g f+ta  Aa+a+++a+ k++g
  676744504 140 SQYRGVTFYRRTGRWESHIWD------CgKQVYIGGFDTAHAAARAYDRAAIKFRG 189
                78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.07E-15140196IPR016177DNA-binding domain
PfamPF008472.0E-9140189IPR001471AP2/ERF domain
SMARTSM003802.2E-29141203IPR001471AP2/ERF domain
PROSITE profilePS5103217.319141197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-16141196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MYNTNEKNEM VSKSQHNVIY SCLIESITQN HDEYASENQL DRCWSLTCVT SLFWSFFQEH  60
KECWILILTL TPLTRLSTVT HAQIGRRHQA AREIDWRSQG RPRRRYLSHG ETKLLDPDQA  120
AVPVPAKGKK IRRGPRSKSS QYRGVTFYRR TGRWESHIWD CGKQVYIGGF DTAHAAARAY  180
DRAAIKFRGV DADINFIAGD YEEDMKQVQN LSKEEYMYSL RRKSSRGISK YQMGSKDGGI  240
SW
Cis-element ? help Back to Top
SourceLink
PlantRegMap676744504
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6183179e-86KC618317.1 Cardamine flexuosa TOE1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A328DAL64e-50A0A328DAL6_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1938833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.18e-46target of early activation tagged (EAT) 2