PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676744590
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 218aa    MW: 24692.3 Da    PI: 6.2526
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676744590genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07547344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT  Ed+ + +a  +++ g   +W++Ia  ++  +++ ++++++
        676744590  5 QWTRSEDKMFEQALVLFPEGspnRWERIADQLQ--KSAGEVREHY 47
                     7*******************************9..8********9 PP
2Myb_DNA-binding41.53.2e-1399143347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++ E++l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
        676744590  99 PWSENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 143
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.076155IPR017930Myb domain
SMARTSM007175.0E-8253IPR001005SANT/Myb domain
SuperFamilySSF466894.81E-12459IPR009057Homeodomain-like
PfamPF002495.7E-6548IPR001005SANT/Myb domain
CDDcd001676.11E-6651No hitNo description
PROSITE profilePS5129418.24492148IPR017930Myb domain
SuperFamilySSF466891.58E-1594148IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-1695147IPR006447Myb domain, plants
SMARTSM007171.5E-896146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-1098142IPR009057Homeodomain-like
PfamPF002493.8E-1199143IPR001005SANT/Myb domain
CDDcd001671.20E-799144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MASSQWTRSE DKMFEQALVL FPEGSPNRWE RIADQLQKSA GEVREHYEAL VHDVIEIDSG  60
RVDVPDYMDD SSAAAGWDSA GQISFGSKHG ENERKRGTPW SENEHKLFLI GLKRYGKGDW  120
RSISRNVVVT RTPTQVASHA QKYFLRQNSG KKERKRSSIH DITTVDANLA LPGSNMDWNG  180
QQDSPPVQPQ QQQPPQIMSE FGQQLTPGGQ FEDFGFRM
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676744590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937361e-162AB493736.1 Arabidopsis thaliana At5g04760 mRNA for hypothetical protein, partial cds, clone: RAAt5g04760.
GenBankAY0509761e-162AY050976.1 Arabidopsis thaliana putative I-box binding factor (At5g04760) mRNA, complete cds.
GenBankAY0911771e-162AY091177.1 Arabidopsis thaliana putative I-box binding factor (At5g04760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423540.11e-140PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H77e-58DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A397ZYQ01e-138A0A397ZYQ0_BRACM; Uncharacterized protein
STRINGBostr.13129s0486.1.p1e-141(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-124MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]