PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676745192
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family LBD
Protein Properties Length: 230aa    MW: 25093.6 Da    PI: 8.2194
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676745192genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.52.8e-302103197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e++
  676745192   2 SCNGCRVLRKGCSETCILRPCLqwiesAESQGHATVFVAKFFGRAGLMSFISAVPELNRPALFQSLLFEACGRTVNPVNGAVGMLWTGNWHVCQAAVETV 101
                6*********************9999777889****************************************************************9998 PP

     DUF260  96 ll 97 
                l+
  676745192 102 LR 103
                76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.2971107IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESAE SQGHATVFVA KFFGRAGLMS FISAVPELNR  60
PALFQSLLFE ACGRTVNPVN GAVGMLWTGN WHVCQAAVET VLRGGTLRPI SDLLESPSLI  120
SSGESSENSR NHHCRFSTSR AKLEESPVNR KRTKTDRFDH SDMDLKLNQG LALTGPVVSV  180
PLLPPRPFCN GGDHPGSPSE ESVTTSCCEN GISGDGYRNK REKKLLNLFV
Cis-element ? help Back to Top
SourceLink
PlantRegMap676745192
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738741e-152AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBankAY0721441e-152AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBankAY1229761e-152AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411876.11e-135LOB domain-containing protein 39
SwissprotQ9SZE81e-125LBD39_ARATH; LOB domain-containing protein 39
TrEMBLV4MAC01e-134V4MAC0_EUTSA; Uncharacterized protein
STRINGXP_006411876.11e-135(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-109LOB domain-containing protein 39