PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676745236
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 254aa    MW: 29441 Da    PI: 6.1448
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676745236genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.64.2e-11142187553
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                ++ +r+++NRe+ArrsR RK+  i +L++ v +L+ +N++L ++l   +
  676745236 142 RKRKRMESNRESARRSRMRKQSHINNLRNQVNQLDLKNRELGNQL---R 187
                67899*********************************9998444...4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.0E-10135188No hitNo description
SMARTSM003381.0E-12138202IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.68140203IPR004827Basic-leucine zipper domain
PfamPF001702.7E-9142186IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-10142191No hitNo description
CDDcd147021.97E-17143189No hitNo description
PROSITE patternPS000360145160IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MLSTVPAFSL CEPGLVNQFS GFQTGFTPWD WEWDCCDLLS VNQLSIEPAV PSPCYGESDP  60
GLVRTNSGFD DIKTGSDESS AGFIKTKPGF DDAVSSQGIP CTQAYEPDFD DQKQWTAIGN  120
FHSGEQNHDR NKLIQPEMTD ERKRKRMESN RESARRSRMR KQSHINNLRN QVNQLDLKNR  180
ELGNQLRLVI YQLQRVNTDN NRLVAEQEIL RLRLSEMRRI LIIRQLQQQQ QWELNNRRMI  240
MTEQNPSSII DHMI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154161RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap676745236
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022572841.11e-144basic leucine zipper 63-like
TrEMBLA0A3N6RPC91e-147A0A3N6RPC9_BRACR; Uncharacterized protein
STRINGBo7g118720.11e-142(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.11e-127basic leucine-zipper 7