PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676745256
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19988.2 Da    PI: 7.1885
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676745256genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.76.2e-18957149
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               k+ie k  r++ f+kR+ng+lKKA+EL + Cd+++a+  +s++gkl+ +
  676745256  9 KKIEVKKLRNIAFAKRKNGLLKKAYELYIFCDVQIALAFLSPSGKLFLF 57
               68999*****************************************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.876161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-19160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-21279IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-16323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-161057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGRVKIPMKK IEVKKLRNIA FAKRKNGLLK KAYELYIFCD VQIALAFLSP SGKLFLFETK  60
TRIEETIRKY VDMPCYKRGS EKFDDEFDQT PVKDIEDEIK ECDERLVGVK QQLGYYLKNP  120
NQLELMDEIN YQEFLLQTTL AQVRSQKEHL EAESKLLNVS SWPVETNLEI
Cis-element ? help Back to Top
SourceLink
PlantRegMap676745256
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411890.26e-69truncated transcription factor CAULIFLOWER D
TrEMBLM4D5K65e-59M4D5K6_BRARP; Uncharacterized protein
STRINGBra011763.1-P9e-60(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.16e-24AGAMOUS-like 104