PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676745544
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 284aa    MW: 32322.5 Da    PI: 5.0472
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676745544genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.4e-11721031547
                      HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  15 avkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +v+++G+++W++I r ++ gR++k+c++rw + 
        676745544  72 LVEKFGPRNWSLIGRSIP-GRSGKSCRLRWCNQ 103
                      8*****************.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.08271108IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-1471114IPR009057Homeodomain-like
CDDcd001672.40E-871102No hitNo description
PfamPF002498.4E-1071103IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-1072112IPR009057Homeodomain-like
PfamPF048273.8E-20231279IPR006912Harbinger transposase-derived protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEGEIWRRSE TPELREIEEA LTDGRGVGDG GDGEGEEDAT RRRCDEVRWG RDELEGRERA  60
SQWAMVSGGG RLVEKFGPRN WSLIGRSIPG RSGKSCRLRW CNQLDPSLKC KPFTGIMNKH  120
VFMRIVDRLS NEVPFFQQRR DATGRLGHST LQKATTAIRM LAYGCPADEL DENLRTGETT  180
SFLCFENFVE EIINLFGEEY LRRPTPEDLQ RLLDIGEIRG FPGMIGSIDC TLNDINVLDR  240
SPVFDDILEG RAPKVNYIVN GHEYHLAYYL TDGIYPNRTM VAVK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676745544
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639373.15e-90PREDICTED: putative nuclease HARBI1
RefseqXP_022552838.16e-90putative nuclease HARBI1
RefseqXP_022559122.16e-90putative nuclease HARBI1
TrEMBLA0A0D3D8N95e-95A0A0D3D8N9_BRAOL; Uncharacterized protein
STRINGBo7g065560.18e-96(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.13e-19myb domain protein 109