PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676745624
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 189aa    MW: 21902.5 Da    PI: 5.5357
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676745624genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.1e-1074132563
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                +r +rk +NRe+A+rsR +K++ +ee      +L+ eN++L +++     ++++ ++e+
  676745624  74 RRKKRKLSNRESAKRSRVKKQKHLEEMSIQLNQLKIENQELTNQIRYVLYHCQQTQTEN 132
                799***************************************99988888888777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-867125No hitNo description
SMARTSM003386.5E-1170134IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.49672118IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.44E-974122No hitNo description
PfamPF001706.7E-974131IPR004827Basic-leucine zipper domain
CDDcd147029.09E-2075126No hitNo description
PROSITE patternPS0003607792IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSTISPVFSC EPGLTTHVPA FETGFTPWDI SHLFSVFDSQ IDLIPDLAHE YPSPDSVNRS  60
GSDDIPTDSY TDERRKKRKL SNRESAKRSR VKKQKHLEEM SIQLNQLKIE NQELTNQIRY  120
VLYHCQQTQT ENDLLRLEHR MLHDTLLNIR QVLMFSQIEE SSDCATWPYD NSTVVTVQQD  180
PSVITNHVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17279ERRKKRKL
27394RRKKRKLSNRESAKRSRVKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676745624
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438447.11e-105PREDICTED: bZIP transcription factor 2
TrEMBLA0A397XZ971e-103A0A397XZ97_BRACM; Uncharacterized protein
STRINGBra036025.1-P1e-102(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.19e-81basic leucine-zipper 5