PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676745668
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 335aa    MW: 37123.2 Da    PI: 6.6756
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676745668genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18247281135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  676745668 247 CSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRL 281
                *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.5E-10118335IPR016679Transcription factor, GATA, plant
SuperFamilySSF577162.61E-14238303No hitNo description
PROSITE profilePS5011411.952241277IPR000679Zinc finger, GATA-type
SMARTSM004012.3E-16241295IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.8E-15245279IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.63E-15246294No hitNo description
PROSITE patternPS003440247272IPR000679Zinc finger, GATA-type
PfamPF003201.3E-16247281IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MERIEAGLKS SIRQEMALKT TAPAYEEFIA VTSVQNDFSS EDFSVDDLLD LSNDDVFTEE  60
EEAEPTKSQQ QDVLRVSSQE PNREAHDFVS LPSNQLSVPA DELADLEWLS HFVEDSFTEY  120
SAPNLTGTPK EKPAWLTGDR KHPVTPATEE SCFKSPLPAK ARSRRHRSGV KLWSLGSSGP  180
SSSGSTSSSS SSSGLSSPWF SGAELLEPDF TFDKPPALKK HKKRSAESVF SGKLVHQQQQ  240
QQPMRRCSHC GVQKTPQWRA GPMGAKTLCN ACGVRYKSGR LLPEYRPACS PTFSSELHSN  300
HHRKVIEMRR KKEPTDDNQT GLNQAVQSPQ AVPSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676745668
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613588.11e-170PREDICTED: GATA transcription factor 5-like
RefseqXP_013641396.11e-170GATA transcription factor 5-like
RefseqXP_022550469.11e-170GATA transcription factor 5-like
SwissprotQ9FH571e-160GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A3P6FRS51e-170A0A3P6FRS5_BRAOL; Uncharacterized protein
STRINGBo1g039780.11e-170(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-149GATA transcription factor 5