PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676745678
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 382aa    MW: 41831.9 Da    PI: 6.3021
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676745678genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.43.8e-32159259198
     DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskkiW 96 
                k+fqrl+se+Dei++LqG++df++++g +p++++daf+++vk  i+f++sk q+v+K++r KkKf + vk+     k++++++ ske dqk+fels+kiW
  676745678 159 KMFQRLFSETDEIAMLQGFLDFTETRG-DPYENMDAFCDYVKTLINFNASKAQIVTKLQRCKKKFVNIVKNslkkGKTEDKVKCSKELDQKAFELSRKIW 257
                58************************9.9************************************9999887777899999******************* PP

     DUF573  97 gs 98 
                g+
  676745678 258 GT 259
                95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.1E-26161258IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MAPKRADKID IPPAAASSSE EEEEESGSSV EESGSSDDEA GDVQSKLTQK TPASPAATTK  60
KPESDSEEGE SESESESDSE HATKTKPLNT VVSKTKPETS GSAAAVALPE SSTSKRSLKQ  120
ADDDESKKKA KTTEHVKKKP ETTGTDEEVK KISGEEAKKM FQRLFSETDE IAMLQGFLDF  180
TETRGDPYEN MDAFCDYVKT LINFNASKAQ IVTKLQRCKK KFVNIVKNSL KKGKTEDKVK  240
CSKELDQKAF ELSRKIWGTD GFLPAKPRKK SKGEKPPPSP LHTHKMEVDM DKHNANVVEA  300
HLTSSGEMAS FFKAGNVSCS GLDESTVSAL WDMVEDGPKK KAMEEKLKKL KATQVELCLL  360
RTALVDTTTK MIFKDNGSSS SR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676745678
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609353.11e-160PREDICTED: mediator-associated protein 1-like
SwissprotQ9SB423e-98STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLA0A3P6FL141e-161A0A3P6FL14_BRAOL; Uncharacterized protein
STRINGBo1g039870.11e-159(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.17e-85DNA-binding storekeeper protein-related transcriptional regulator