PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676745718
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 188aa    MW: 21505.9 Da    PI: 9.0303
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676745718genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.51.6e-152576255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               + +h e+E++RR+++ s ++ Lr+llP  +   ++K s ++ L +Av+YIk+Lq
  676745718 25 KIMHREVEKQRRQEMASLYASLRSLLPLEF--IQGKRSTSDQLNEAVNYIKYLQ 76
               568*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-142289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.1832375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.14E-102580No hitNo description
PfamPF000101.7E-122676IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-122789IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-72981IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MNNFPEKRRK RHKELGGSSE ENMEKIMHRE VEKQRRQEMA SLYASLRSLL PLEFIQGKRS  60
TSDQLNEAVN YIKYLQRNIK DMNSKRDDLM LLSGRKLGNR NAQGVNENSN HVVIRPCLVG  120
VEIVFNVLQT PLSSVLQVLC EHGLCVLCCI SSNVNGRLIH TLQAEVNDLA LIDFADLRNT  180
LNMLTLMK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676745718
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480741.11e-103PREDICTED: transcription factor bHLH118-like
SwissprotQ9STJ71e-85BH118_ARATH; Transcription factor bHLH118
TrEMBLA0A3N6RD671e-100A0A3N6RD67_BRACR; Uncharacterized protein
STRINGBra019167.1-P7e-97(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.14e-88bHLH family protein