PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676745906

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HRT-like

Protein Properties

Length: 387aa MW: 43613.5 Da PI: 9.7856

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676745906	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	53.9	3e-17	183	213	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv ledG++C++ Pv gRKRC +HKG+Ri 676745906 183 VCGVFLEDGTTCMTAPVIGRKRCTAHKGKRI 213 7*****************************7 PP
2	HRT-like	47.6	2.8e-15	238	268	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil d C+++Pv RKRCeeHKGmR+ 676745906 238 ICGVILPDMVRCRTKPVSRRKRCEEHKGMRV 268 8*****************************7 PP
3	HRT-like	27.1	7.2e-09	308	335	1	28
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKG 28 +C +++++G +C+r++ g RC++HK+ 676745906 308 VCEATTKNGLPCTRSAPNGSRRCWQHKD 335 6**************************7 PP
4	HRT-like	65.1	9.8e-21	355	385	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l +GsvC+++PvkgRKRCeeHKGmRi 676745906 355 ICGVKLYNGSVCEKPPVKGRKRCEEHKGMRI 385 8*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MFKRDDHVRT KPNAVFSKWQ GFARSMLLPK PFTETVELRR TVADYSLISR DLGPKILIGV 60 KDMEDFRKGK DFGGRYRGLG DMKASKVDAE DNIRTRLRSY GRSVPYQDLL KELGENQSRS 120 QTKPGVSQKD IGNRTKDKKH DFAAEENNNV LPSIHRLSRS RPRSVLERHD DVEIVDGSDS 180 ASVCGVFLED GTTCMTAPVI GRKRCTAHKG KRISSVPSFD KSQCEVPTGR EKEEAEDICG 240 VILPDMVRCR TKPVSRRKRC EEHKGMRVNA FFFLLNPTER DQVLKEDKAK PETRTSTMNQ 300 DESGRGLVCE ATTKNGLPCT RSAPNGSRRC WQHKDENLDH SSSENVQSAT GSQVICGVKL 360 YNGSVCEKPP VKGRKRCEEH KGMRIVP

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MFKRDDHVRT KPNAVFSKWQ GFARSMLLPK PFTETVELRR TVADYSLISR DLGPKILIGV  60
KDMEDFRKGK DFGGRYRGLG DMKASKVDAE DNIRTRLRSY GRSVPYQDLL KELGENQSRS  120
QTKPGVSQKD IGNRTKDKKH DFAAEENNNV LPSIHRLSRS RPRSVLERHD DVEIVDGSDS  180
ASVCGVFLED GTTCMTAPVI GRKRCTAHKG KRISSVPSFD KSQCEVPTGR EKEEAEDICG  240
VILPDMVRCR TKPVSRRKRC EEHKGMRVNA FFFLLNPTER DQVLKEDKAK PETRTSTMNQ  300
DESGRGLVCE ATTKNGLPCT RSAPNGSRRC WQHKDENLDH SSSENVQSAT GSQVICGVKL  360
YNGSVCEKPP VKGRKRCEEH KGMRIVP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that negatively modulates gibberellin-mediated developmental processes. May act as transcriptional repressor of giberellin controlled genes. Binds DNA without sequence preference. {ECO:0000269\|PubMed:16244914}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676745906

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013625967.1	0.0	PREDICTED: uncharacterized protein LOC106332051
Refseq	XP_013697991.2	0.0	protein EFFECTOR OF TRANSCRIPTION
Swissprot	A2RQG7	1e-180	ET_BRANA; Protein EFFECTOR OF TRANSCRIPTION
TrEMBL	A0A3N6QBK7	0.0	A0A3N6QBK7_BRACR; Uncharacterized protein
STRING	Bostr.7867s0437.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26170.1	1e-131