PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676746044
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MIKC_MADS
Protein Properties Length: 773aa    MW: 86953 Da    PI: 9.531
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676746044genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.5e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+i+n + rqvtfskRr gi+KKA ELS+LCda+va+iifs tgkl+e+ss
  676746044  9 KKIDNITARQVTFSKRRRGIFKKADELSILCDADVALIIFSATGKLFEFSS 59
               68***********************************************96 PP
2K-box47.38.8e-171181853198
      K-box  31 LqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                +  +  +l GedLe L+l+eLq+Le+ Le++l+++ +kK e++++qi+ l k+  el +en++Lr++l
  676746044 118 IAGTDQKLRGEDLEGLNLEELQRLEKLLETGLSRVSEKKGEYVMSQISSLEKRGSELVDENRRLREQL 185
                4556789**********************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.2E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.52161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-29372IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-24323IPR002100Transcription factor, MADS-box
PfamPF003195.1E-241057IPR002100Transcription factor, MADS-box
CDDcd002653.16E-301269No hitNo description
PRINTSPR004041.5E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.60287191IPR002487Transcription factor, K-box
PfamPF014862.1E-12120185IPR002487Transcription factor, K-box
CDDcd112991.28E-144358715No hitNo description
PfamPF102509.3E-63363710IPR019378GDP-fucose protein O-fucosyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MAREKIKIKK IDNITARQVT FSKRRRGIFK KADELSILCD ADVALIIFSA TGKLFEFSSS  60
RMRDILGRYN LHASNINKLM GQPSPYHQLE NCNLSRLSKE VEDKTKQLRY QHVASTRIAG  120
TDQKLRGEDL EGLNLEELQR LEKLLETGLS RVSEKKGEYV MSQISSLEKR GSELVDENRR  180
LREQLVTLEM AKTMALKEAV ETESATTNVS SYDSGAPLED DFSDTSLKLG CYMQLIKKDM  240
PTLTRSEPFQ SLNQSQRTAL VGVFLLLFPL LSPNLFRPLG RASPSLFSVS LHLLSYLEEA  300
IEWNAPRPRH LRLLEGALDR QILIRQQVEL WSPLADQAWK PCTQPYRGSP LPEKSQGFLQ  360
VFLDGGLNQQ RMGICDAVAV AKILNVTLVI PRLEVNPVWQ DSSSFADIFD VDHFISFLKN  420
EVRIVKELPT QYSWSTRDYY ATGIRATRIK TAPTHASAEW YVENVLPVIQ SYGIAAVAPF  480
SHRLAFDNLP ESIQRLRCKV NFEALNFVPR IRELGDALVH RLRNPPSTSK TSGTMDPADR  540
INTIVKAGAG KFVVLHLRFD KDMAAHSGCD FGGGKAEKLA LAKYRQVIWQ GRVLNSQFTD  600
EELRNKGRCP LTPEEIGLLL SALGFTNNTR LYLASHQVYG GEARISTLRK LFPGMENKKS  660
LASAEELADV EGKASLMAAV DYYVSMKSDI FISASPGNMH NALLAHRAYL NLKTINPNMI  720
LLGQVLVNKS LGWSEFEASV LNGHKNRQGQ LRLRKQKQSI YTYPAPDCMC KVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-16169169MEF2C
5f28_B3e-16169169MEF2C
5f28_C3e-16169169MEF2C
5f28_D3e-16169169MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676746044
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2278130.0AK227813.1 Arabidopsis thaliana mRNA for PsRT17-1 like protein, complete cds, clone: RAFL14-37-P07.
GenBankBT0087750.0BT008775.1 Arabidopsis thaliana At4g24530 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413418.10.0O-fucosyltransferase 31
RefseqXP_024004512.10.0O-fucosyltransferase 31
SwissprotQ7Y0300.0OFT31_ARATH; O-fucosyltransferase 31
TrEMBLM4DBF20.0M4DBF2_BRARP; Uncharacterized protein
STRINGBra013812.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM242322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.11e-104AGAMOUS-like 24
Publications ? help Back to Top
  1. Hansen SF,Harholt J,Oikawa A,Scheller HV
    Plant Glycosyltransferases Beyond CAZy: A Perspective on DUF Families.
    Front Plant Sci, 2012. 3: p. 59
    [PMID:22629278]
  2. Neumetzler L, et al.
    The FRIABLE1 gene product affects cell adhesion in Arabidopsis.
    PLoS ONE, 2012. 7(8): p. e42914
    [PMID:22916179]
  3. Wang Y,Mortimer JC,Davis J,Dupree P,Keegstra K
    Identification of an additional protein involved in mannan biosynthesis.
    Plant J., 2013. 73(1): p. 105-17
    [PMID:22966747]
  4. Voxeur A,André A,Breton C,Lerouge P
    Identification of putative rhamnogalacturonan-II specific glycosyltransferases in Arabidopsis using a combination of bioinformatics approaches.
    PLoS ONE, 2012. 7(12): p. e51129
    [PMID:23272088]