PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676746572

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

M-type_MADS

Protein Properties

Length: 189aa MW: 21541.4 Da PI: 8.6532

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676746572	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.3	2.3e-19	12	57	4	49
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ rqvtfskRr+g++KKA+EL +LC+ae +++fs+ gk + y 676746572 12 QDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSY 57 56678**********************************9996665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.796	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-31	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.46E-26	1	73	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-23	12	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MGRRKIKMEI VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP GGKPFSYGKP 60 NLDAVTDRFI KESSDDPDTS DEEGRCNNTK RPPKLKKLNE RLDYLNQEIE AEKKRGQKSQ 120 AKLESAGDKR FEKPIEKLTL DELKQYENML QKVHGRIQGQ VNKMEASSSL VLLSVSEDKA 180 PEEYEDLDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-15	1	73	1	73	MEF2 CHIMERA
6byy_B	2e-15	1	73	1	73	MEF2 CHIMERA
6byy_C	2e-15	1	73	1	73	MEF2 CHIMERA
6byy_D	2e-15	1	73	1	73	MEF2 CHIMERA
6bz1_A	2e-15	1	73	1	73	MEF2 CHIMERA
6bz1_B	2e-15	1	73	1	73	MEF2 CHIMERA
6bz1_C	2e-15	1	73	1	73	MEF2 CHIMERA
6bz1_D	2e-15	1	73	1	73	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676746572

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410589.1	4e-97	agamous-like MADS-box protein AGL29
Swissprot	O64703	2e-89	AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBL	V4MAC2	9e-96	V4MAC2_EUTSA; Uncharacterized protein
STRING	XP_006410589.1	2e-96	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	8e-82	AGAMOUS-like 29

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]