PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676746666
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 249aa    MW: 28194 Da    PI: 9.5429
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676746666genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.9e-2171120255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ykGVr+++ +g+WvAeIr p++   r+r +lg++gtaeeAa a+++a+ +l+g
  676746666  71 LYKGVRQRH-WGKWVAEIRLPKN---RTRLWLGTYGTAEEAALAYDEAAFQLRG 120
                59******9.**********965...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.82E-3270128No hitNo description
SMARTSM003801.2E-3571134IPR001471AP2/ERF domain
PROSITE profilePS5103222.10271128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3071129IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2171128IPR016177DNA-binding domain
PRINTSPR003674.9E-107283IPR001471AP2/ERF domain
PfamPF008471.2E-1572120IPR001471AP2/ERF domain
PRINTSPR003674.9E-1094110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
METTSLFNFS KPNTSSGLNQ SKPLDLNQLT PYQIYQIQNK LNHRRTTISS LSPNRMRMKR  60
VSSPSSKSQK LYKGVRQRHW GKWVAEIRLP KNRTRLWLGT YGTAEEAALA YDEAAFQLRG  120
DITKLNFPKI VKEDLNHLPS SVNAKLQAIC QSLRKTEETC SVLTKTEDIC SVSSKSEDIC  180
SVSGKTEIFL MKTEHTQTKK CSYENSMSSS EQSIAFLGFK DSEFDEIGSF GLVKFPSVEI  240
DWDAISKLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2170128160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15459RMRMKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676746666
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635195.11e-119PREDICTED: ethylene-responsive transcription factor ERF056
SwissprotQ9SIE41e-114ERF56_ARATH; Ethylene-responsive transcription factor ERF056
TrEMBLA0A0D3C1481e-117A0A0D3C148_BRAOL; Uncharacterized protein
STRINGBo4g149390.11e-118(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.11e-104ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]