PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676746808
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 302aa    MW: 33538.8 Da    PI: 8.7672
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676746808genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.66.4e-082145232
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfs 32
                ++GVr++  +g+WvAeIr+p     ++  +
  676746808 21 TFRGVRQRT-WGKWVAEIREP-----NRGSW 45
               69****999.**********8.....45444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-92143IPR001471AP2/ERF domain
PROSITE profilePS510329.2822142IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-52145IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRSRKGCMK GKGGPENAKC TFRGVRQRTW GKWVAEIREP NRGSWAYKLD TVGGLDLGLS  60
PVNRSCGACS GSFSFLQEDD HYNSNRCLSS SGSSISWLLP KRSHSQYQES INAESGCGGE  120
SGGLKFSTNW KPKNVAIPPD YGSPNGVWSR YLVGQEKKTE YDLSSSCGSS GNKESVSVPS  180
SGGGEGMHRP EVEKGTWYLE MDDLLEIDYW IHQSSWPLLF WHVPLYVDVR SGVISRMDGV  240
WGLKIGCSTL LFKPVGGQWK KWADGNELIG CTTLFSRFKG WTTNEMERGR HKALWKDALI  300
SQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676746808
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0516262e-47AC051626.5 Genomic Sequence For Arabidopsis thaliana Clone F20L16 From Chromosome V, complete sequence.
GenBankAY5608532e-47AY560853.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18450) mRNA, complete cds.
GenBankBT0260742e-47BT026074.1 Arabidopsis thaliana At5g18450 mRNA, complete cds.
GenBankCP0026882e-47CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475585.12e-78PREDICTED: dehydration-responsive element-binding protein 2G-like
RefseqXP_018475586.12e-78PREDICTED: dehydration-responsive element-binding protein 2G-like
SwissprotP618272e-69DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A178UDI43e-67A0A178UDI4_ARATH; Uncharacterized protein
STRINGXP_010420608.12e-73(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.14e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]