PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676747476

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 278aa MW: 32194.1 Da PI: 7.5576

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676747476	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	122.1	4.9e-38	4	163	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k................................kvkaeekewyfFskrdk 66 p+G+rF Ptdee+v++yL+ k+ g + ++++vi++vdi++++Pw+Lp k +++++++ wyfF +++k 676747476 4 PVGLRFLPTDEEIVDHYLRLKILGGSttSHVDQVISTVDICNFDPWELPsKshessstvisklgdwfliqgfyypscsfsvqsRMESKDQVWYFFGRKEK 103 89******************999866667789**********95489**********************99888888999****** PP NAM 67 kyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +y++g+r++r tksg+Wk+tg + +v++k ++e++g k++Lvf+ ++g+kt+Wvmhey++ 676747476 104 RYNRGERQSRRTKSGFWKKTGVTMDVKRKrgHREKIGEKRVLVFH----SSGSKTNWVMHEYHA 163 ***********************99777788******....7999*******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-15	2	57	IPR003441	NAC domain
PROSITE profile	PS51005	39.203	3	182	IPR003441	NAC domain
Pfam	PF02365	3.0E-23	4	162	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-22	90	182	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MENPVGLRFL PTDEEIVDHY LRLKILGGST TSHVDQVIST VDICNFDPWE LPSKSHESSS 60 TVISKLGDWF LIQGFYYPSC SFSVQSRMES KDQVWYFFGR KEKRYNRGER QSRRTKSGFW 120 KKTGVTMDVK RKRGHREKIG EKRVLVFHSS GSKTNWVMHE YHATCLSPYQ NMTYAICKVQ 180 FKGEEREISS PGSNIVEHSH SLNYSGRELG VGSEELQNPR QLSGFVDKQQ ETQIEEAIQR 240 VFDKLSSDDW KCLFDDDENE KSKTVCMQNS PTGVFNWS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676747476

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013695676.1	1e-127	NAC domain-containing protein 5-like
Swissprot	O81914	1e-85	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	M4EWW4	1e-119	M4EWW4_BRARP; Uncharacterized protein
STRING	Bra033299.1-P	1e-119	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	6e-88	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]