PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676747492
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 187aa    MW: 20489.2 Da    PI: 5.3289
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676747492genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-183989155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+++l+g
  676747492 39 PVYHGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAALCLKG 89
               68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-123989IPR001471AP2/ERF domain
SMARTSM003803.7E-3340103IPR001471AP2/ERF domain
PROSITE profilePS5103222.9854097IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-214099IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-304098IPR001471AP2/ERF domain
PRINTSPR003675.6E-124152IPR001471AP2/ERF domain
CDDcd000182.72E-304198No hitNo description
PRINTSPR003675.6E-127999IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKLSPPPPQL TNNDPTAAAS PVKSCGGGGR ETCSPTRHPV YHGVRKRRWG KWVSEIREPR  60
KKSRIWLGSF PVPEMAAKAY DVAALCLKGR KAQLNFPDEI DDLPRPSTCT ARDIQVAAAK  120
AANAVKVIKT VDDVADIDDG DDFWEGIELP ELMMNGGGWS PEPFVAGDDA TWLVDGDSYQ  180
YQFMACL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1628101476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676747492
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531060.0AK353106.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418405.21e-111ethylene-responsive transcription factor ERF023
SwissprotQ1ECI21e-109ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A1J3GDZ31e-111A0A1J3GDZ3_NOCCA; Uncharacterized protein (Fragment)
STRINGA0A087HK571e-111(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-98ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]