PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676747542
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 444aa    MW: 51000.6 Da    PI: 5.3744
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676747542genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.11e-3761402128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 
                 pG+ F+P deelv +yL++k+ g++  ++  i+ v+i++++Pw+L+  +k+k+++  wyfFs+r++kya+g+r++r t sg+Wk tg++ +v+++    
  676747542   6 KPGYGFRPYDEELVGYYLRNKLLGNNSLVDGDIALVNICTFDPWNLRfqSKIKSRDPVWYFFSRRENKYANGNRQSRRTPSGFWKLTGESIDVKDQwgkl 105
                59************************888778**************85348888888**************************************96666 PP

        NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   + ++g k++Lvf kg++++ +k++Wvmhe + 
  676747542 106 cgFRGKIGHKRVLVFLKGKSSENTKSEWVMHELHY 140
                654445**************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.2825158IPR003441NAC domain
SuperFamilySSF1019418.76E-416158IPR003441NAC domain
PfamPF023653.3E-207139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEEENKPGYG FRPYDEELVG YYLRNKLLGN NSLVDGDIAL VNICTFDPWN LRFQSKIKSR  60
DPVWYFFSRR ENKYANGNRQ SRRTPSGFWK LTGESIDVKD QWGKLCGFRG KIGHKRVLVF  120
LKGKSSENTK SEWVMHELHY TLLPEAKRTY VICRLEYKGD DVSILSANAT DPTPTSFAPN  180
MANSAGSVVD QSFQGNSGYY NTMSEYDTAY QGQQFNGNVN TQQTFLGSTG YFNSISDYDL  240
TNQDYWFSGN LNLQQQQQQV PYSAPYDDDL DMWNQLVEEN CDSLVDERTR MQENYNDYRP  300
RNPLTGVFSD DSSDSDTDSM NGRDAWSSTD SVGSREGSYQ TPKYDTPSLS TVEPVHNHEA  360
QEQPKKLKLQ LQGKQKVIKK QKSKSEWKMA EGSIKEAPST TEVKQSWIVL EEMSQRNSRW  420
NYLKNMITGF LLFISIIGWI ILVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-21715519162NO APICAL MERISTEM PROTEIN
1ut4_B3e-21715519162NO APICAL MERISTEM PROTEIN
1ut7_A3e-21715519162NO APICAL MERISTEM PROTEIN
1ut7_B3e-21715519162NO APICAL MERISTEM PROTEIN
3swm_A3e-21715522165NAC domain-containing protein 19
3swm_B3e-21715522165NAC domain-containing protein 19
3swm_C3e-21715522165NAC domain-containing protein 19
3swm_D3e-21715522165NAC domain-containing protein 19
3swp_A3e-21715522165NAC domain-containing protein 19
3swp_B3e-21715522165NAC domain-containing protein 19
3swp_C3e-21715522165NAC domain-containing protein 19
3swp_D3e-21715522165NAC domain-containing protein 19
3ulx_A3e-21713717137Stress-induced transcription factor NAC1
4dul_A3e-21715519162NAC domain-containing protein 19
4dul_B3e-21715519162NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676747542
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418366.10.0NAC domain-containing protein 1 isoform X2
SwissprotQ0WV961e-177NAC1_ARATH; NAC domain-containing protein 1
TrEMBLV4KZD40.0V4KZD4_EUTSA; Uncharacterized protein
STRINGXP_006418366.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.11e-157NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]