PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676747594

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bZIP

Protein Properties

Length: 159aa MW: 18645.9 Da PI: 7.1474

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676747594	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.6	7.7e-15	58	119	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e+e+ r +r+ +NR++A+ R+RKk ++ eLe++vk Lea+N++L +++++l+ke l+ + 676747594 58 ERESSRLKRLLRNRVSAQQARERKKVYVNELEKRVKDLEAKNTELEEKVSTLQKENHMLRHD 119 78999**************************************************9988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00170	1.1E-13	58	120	IPR004827	Basic-leucine zipper domain
SMART	SM00338	1.7E-12	58	122	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.139	60	117	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.3E-17	63	117	No hit	No description
CDD	cd14704	4.60E-16	63	114	No hit	No description
SuperFamily	SSF57959	2.56E-13	63	117	No hit	No description
PROSITE pattern	PS00036	0	65	80	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MNTERFTESV LRVHMKEDSD NEVGEIHDLD AGEQLLVGSD AVKLLGEGQR RRGKDPAERE 60 SSRLKRLLRN RVSAQQARER KKVYVNELEK RVKDLEAKNT ELEEKVSTLQ KENHMLRHDN 120 CYQLQIHQAE VYLALEITQS YESINDCYKK REGRKGHQE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676747594

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018439034.1	2e-65	PREDICTED: transcription factor HY5-like
TrEMBL	A0A1J3IVF6	5e-43	A0A1J3IVF6_NOCCA; Transcription factor HY5
STRING	XP_010525968.1	1e-46	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5691	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	5e-23	bZIP family protein