PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676748218

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bZIP

Protein Properties

Length: 457aa MW: 49683.3 Da PI: 9.7052

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676748218	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.8	4.8e-08	322	381	5	64
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 kr r NR +A rs + + + eLe kv++L++eN aL ++ + e +l+ e++ 676748218 322 KRVERILANRKSAARSKDKQAQFVYELEAKVDALKTENAALTAHIKLVERERLALEEENK 381 67778889*******************************************999999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.9E-8	318	382	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	6.4E-7	320	372	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.829	320	383	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.82E-8	322	377	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.8E-9	322	383	No hit	No description
CDD	cd14703	1.52E-13	323	368	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MNRHAEIAPL NTSFVHSTHF PSPPANGRTE SGKRDDMSTP RRSSLPPLPL SSLIPRTPQP 60 TGLENFNPGP RISRQPSPAP AFSFGSLPPM SSAPTSFTDT QSTPVAYHNA ALPPLPVTRP 120 NASGVSRTAL PPRKIHRRAN SDSVSSTNPL MPKGGMRMVY PRPVEMPVGV TKAKESSGGQ 180 ESDEEDDANA YMDISDNNFN ISNEEGGDRI SRDSENGKTN GSENGRKATS GVKRSRRAGK 240 EISPSSSRIS SESISVDSNL NGKSSSSGGE LPPSPGNLQG VTNSVDGNEN ASQTEKYKFN 300 AYDLQQIMRS EKLKAMVVTN PKRVERILAN RKSAARSKDK QAQFVYELEA KVDALKTENA 360 ALTAHIKLVE RERLALEEEN KHLRIRVEGM MEHARLCDAF MGYLTGEVNQ LKKTNVEVLP 420 NSSEYGRSNG QSVNGDMLQQ LNVGQPNQQP QTNLGLE

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MNRHAEIAPL NTSFVHSTHF PSPPANGRTE SGKRDDMSTP RRSSLPPLPL SSLIPRTPQP  60
TGLENFNPGP RISRQPSPAP AFSFGSLPPM SSAPTSFTDT QSTPVAYHNA ALPPLPVTRP  120
NASGVSRTAL PPRKIHRRAN SDSVSSTNPL MPKGGMRMVY PRPVEMPVGV TKAKESSGGQ  180
ESDEEDDANA YMDISDNNFN ISNEEGGDRI SRDSENGKTN GSENGRKATS GVKRSRRAGK  240
EISPSSSRIS SESISVDSNL NGKSSSSGGE LPPSPGNLQG VTNSVDGNEN ASQTEKYKFN  300
AYDLQQIMRS EKLKAMVVTN PKRVERILAN RKSAARSKDK QAQFVYELEA KVDALKTENA  360
ALTAHIKLVE RERLALEEEN KHLRIRVEGM MEHARLCDAF MGYLTGEVNQ LKKTNVEVLP  420
NSSEYGRSNG QSVNGDMLQQ LNVGQPNQQP QTNLGLE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676748218

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4224	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	2e-33	bZIP family protein