PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676748222
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family BBR-BPC
Protein Properties Length: 295aa    MW: 33037.5 Da    PI: 9.6544
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676748222genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind327.34.4e-10012951301
  GAGA_bind   1 mdddgsre..rnkg.yye..............paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83 
                m++ g++e  r+++ y +              ++++l   +++++ms++aerda+i ern+a+++kk+a+a+rd+a++qrdkal+er+kal+erdn+++a
  676748222   1 MENGGQYEngRHRPdYLKgsmwnmlpqhqikeQHNALV--MNKKIMSILAERDAAILERNQAVAAKKEAIAARDEALQQRDKALTERDKALIERDNAFAA 98 
                89999998899999777799999999887754446666..99********************************************************** PP

  GAGA_bind  84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
                l+++ensl++a       lsg k+ d          +d+ + + e++kl a+p+++ ++e+ +kkk+ kr  +k++k+    + kk +e+ ++ v++++ 
  676748222  99 LQHHENSLNFA-------LSGGKCYDG---------DDDGFSTGETHKLVAFPLSTIPPEVANKKKVTKR--KKENKQGPP-QGKKVGEDLNRLVAAPG- 178
                ******96655.......599999993.........56789999****************9999988833..333333333.44556789999*****9. PP

  GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283
                 ++ ++++++ d +ln v++De t+PvP+C+CtG+ rqCYkWGnGGWqS+CCttt+S++PLP+++++r++R++grKmS+++f++lL++LaaeGydls+pv
  676748222 179 -KKCRTDWDTNDAGLNLVTFDERTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSQHPLPQMPNKRHSRVGGRKMSGNVFSRLLSRLAAEGYDLSCPV 277
                .57************************************************************************************************* PP

  GAGA_bind 284 DLkdhWAkHGtnkfvtir 301
                DLkd+WA+HGtn+++ti+
  676748222 278 DLKDYWARHGTNRYITIK 295
                *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062178.9E-931295IPR010409GAGA-binding transcriptional activator
SMARTSM012263.6E-1561295IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MENGGQYENG RHRPDYLKGS MWNMLPQHQI KEQHNALVMN KKIMSILAER DAAILERNQA  60
VAAKKEAIAA RDEALQQRDK ALTERDKALI ERDNAFAALQ HHENSLNFAL SGGKCYDGDD  120
DGFSTGETHK LVAFPLSTIP PEVANKKKVT KRKKENKQGP PQGKKVGEDL NRLVAAPGKK  180
CRTDWDTNDA GLNLVTFDER TMPVPMCTCT GTARQCYKWG NGGWQSSCCT TTLSQHPLPQ  240
MPNKRHSRVG GRKMSGNVFS RLLSRLAAEG YDLSCPVDLK DYWARHGTNR YITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676748222
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885000.10.0protein BASIC PENTACYSTEINE4
RefseqXP_020885001.10.0protein BASIC PENTACYSTEINE4
RefseqXP_020885003.10.0protein BASIC PENTACYSTEINE4
SwissprotQ8S8C60.0BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLD7LL180.0D7LL18_ARALL; ATBPC4/BBR/BPC4/BPC4
STRINGfgenesh2_kg.4__42__AT2G21240.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-175basic pentacysteine 4