PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676748812
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 270aa    MW: 30676.7 Da    PI: 4.3416
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676748812genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.88.9e-11746140
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
               k+i nks     fskRrng+  KA+ L+ L da++av+  
  676748812  7 KKITNKSYLAACFSKRRNGLYNKASQLCLLSDAQIAVLAT 46
               68999999*****************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.717149IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-6121IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-10162IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-15273IPR002100Transcription factor, MADS-box
CDDcd002668.86E-22276No hitNo description
PfamPF003193.7E-12850IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-62136IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MRKIEMKKIT NKSYLAACFS KRRNGLYNKA SQLCLLSDAQ IAVLATPSSE NSNVSFFSFG  60
HSSVEAVVSA YLSGERLAPV SIMDSKEMRE DLGVCMGRSD LGLGHWWDDE DRFKNPQETM  120
EGIESMKSLL ARSGDCVRPS VVKGDDKNKD MSNMSDLVLQ TDQTLTTNND DLSAHAARNL  180
DEWSRMDLDQ LIDFNDDDNQ TQEEEEDHHI SENLSRTNNH NALLHENQTQ EEEDHHQIVA  240
VSENPCNNNI ALRNFDHEQE LPDLDFETFF
Cis-element ? help Back to Top
SourceLink
PlantRegMap676748812
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477620.12e-63PREDICTED: agamous-like MADS-box protein AGL97
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.11e-42M-type_MADS family protein