PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676749216
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 307aa    MW: 34586.6 Da    PI: 7.0901
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676749216genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.61e-3221126199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+kv tpsdv+k++rlv+pk++ae++        ++++++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++d  ++ +l+
  676749216  21 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnssTNDNNKGLLLNFEDRTGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDPGNKDKLF 120
                89****************************999455568889************************************************996677789* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                + ++r+
  676749216 121 IDWRRR 126
                ***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-4312132IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-3218129IPR015300DNA-binding pseudobarrel domain
CDDcd100176.32E-2619115No hitNo description
PfamPF023625.2E-3021126IPR003340B3 DNA binding domain
SMARTSM010193.6E-2421127IPR003340B3 DNA binding domain
PROSITE profilePS5086314.52221127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MNLEEEKPVE QASSMEREHM FDKVVTPSDV GKLNRLVIPK QHAERYFPLD NSSTNDNNKG  60
LLLNFEDRTG NSWRFRYSYW NSSQSYVMTK GWSRFVKDKK LDAGDIVSFQ RDPGNKDKLF  120
IDWRRRPKIP DHHHQTTHQF AGAMFPRFYS FPHPQMPATF ESHNLYHRFQ RDLGIGYYVR  180
SMERNDPTAV IESVPVIMQR SAAQVAAMAS SRGEKRLRLF GVDMECGEGG GGGGGGSVNS  240
TEEESSSSGG SMSRGGVSMA GVGSLLQLRL VSSDDESLVA MEPTNVDEDH QLFTKKGKSS  300
LSFDLDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-64161293116B3 domain-containing transcription factor NGA1
5os9_B1e-64161293116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676749216
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402424.10.0B3 domain-containing transcription factor NGA2
SwissprotQ9M2681e-178NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLV4LN250.0V4LN25_EUTSA; Uncharacterized protein
STRINGXP_006402424.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-156B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]