PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676749296
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 355aa    MW: 40383.9 Da    PI: 4.4011
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676749296genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07297351348
                      SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48 
                       WT eE e l  +v+++ g+      W++I ++      ++Rt+ ++k++w++ l
        676749296 297 LWTSEEAEMLRVGVEKFAGEanknmPWRKILEMGEdvfhETRTPANLKDKWRNML 351
                      6*****************99**********99887*****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.851290351IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.2E-9290352IPR009057Homeodomain-like
SuperFamilySSF466892.32E-9293352IPR009057Homeodomain-like
CDDcd116601.93E-12298352No hitNo description
PfamPF139212.7E-5298353No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MKTKSIPVRS CRNSLAPYPS LPESFGSGEI VRDTCDEDQR LVPHKKRHCL LGTDSVVTEP  60
LTSDACIVCG VSDMLVFRCS GIDCLVRFHE ECLTPEFGGN EDLENPFCPY CWFKFVAVKS  120
ESWRDKATRA EEAVSKYLDK DIASDHGLQG ENADCSSQED RVPVDKDSEQ PEEDGGKLQL  180
CTTVVKEDRV IDDEVEASAE DEEMEAMVAT DNFQEAEGDD ESSEVPTKVN TDVSLFLTIQ  240
ESYSGKEVDQ DQQNEKQIRR RVEMNDTDSE ISLTKERNGK TVRDLSFFNK DQRRRVLWTS  300
EEAEMLRVGV EKFAGEANKN MPWRKILEMG EDVFHETRTP ANLKDKWRNM LKALH
Cis-element ? help Back to Top
SourceLink
PlantRegMap676749296
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287565.21e-109uncharacterized protein LOC17882878
TrEMBLA0A1J3J5N41e-128A0A1J3J5N4_NOCCA; Uncharacterized protein (Fragment)
STRINGBostr.2128s0072.1.p1e-120(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327