PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676749330
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ARR-B
Protein Properties Length: 434aa    MW: 49463.2 Da    PI: 5.5953
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676749330genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.52.2e-21215273155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelm....kvkgLtlehvkSHLQkYRl 55 
                k+r+ Wt eLH++F +a+e++G ++kA+Pk il+ m    +v+gLt+++v+SHLQ+ R 
  676749330 215 KQRMTWTAELHQKFEKAIEKIGSADKAVPKLILKYMqedgNVEGLTRNNVASHLQRLRW 273
                79**********************************55555899***********9885 PP
2Response_reg57.11e-19421481107
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   v++vd + + ++l+++++++  y +v+++++g+ea++ lk ++  +Dl++ D  + +++Gl++l +i +e  +lp+++++ + ++e++ +  k Ga 
     676749330  42 VVLVDSDSKSLRLMKKLMTEFSY-QVTVFENGDEAIAFLKMSKheIDLVIWDFHLTEINGLQALNTIGKEM-DLPVVIMSHEHKKETVMKSTKQGAC 136
                   789********************.***************766666**********************6644.7************************ PP

                   EEEESS--HHHH CS
  Response_reg  96 dflsKpfdpeel 107
                    +l+Kp+++e +
     676749330 137 NILVKPVSKEVI 148
                   ******998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.1E-2739163No hitNo description
SuperFamilySSF521726.69E-2439164IPR011006CheY-like superfamily
SMARTSM004483.0E-1340151IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.26841156IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-1742148IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.74E-1544155No hitNo description
PROSITE profilePS5129411.397212276IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-21212274IPR009057Homeodomain-like
SuperFamilySSF466895.02E-13214273IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-18215273IPR006447Myb domain, plants
PfamPF002493.9E-8217271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MSVSSNILKE DSRNLLREEE LCGDETESPM EDEELPTTSI RVVLVDSDSK SLRLMKKLMT  60
EFSYQVTVFE NGDEAIAFLK MSKHEIDLVI WDFHLTEING LQALNTIGKE MDLPVVIMSH  120
EHKKETVMKS TKQGACNILV KPVSKEVIAV LWQHVYRKRM SKSGLDSVES NLEEDGGLGL  180
DNNDLYLSNE EGSKNVDDDS GEQNTSYQKG HKNKKQRMTW TAELHQKFEK AIEKIGSADK  240
AVPKLILKYM QEDGNVEGLT RNNVASHLQR LRWQKYRQNA EKRSCVPYET REDSCWPNAG  300
PNTALTSSKS LLNSSYGLHN RAPYFTSDQA AANTPMPYQS NNYLTVNNSH FMTNPLANLP  360
YTDSFHQPQQ QYQHQQYYHS SLQLPSVITK QDPSYVSAAM ENPDLITNQN SPFFDHGEYF  420
PPGLNNFDPS TNRY
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676749330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639954.10.0putative two-component response regulator ARR20
SwissprotQ9LZJ81e-133ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLA0A078FEL10.0A0A078FEL1_BRANA; BnaA09g40030D protein
STRINGBra041027.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.11e-107response regulator 20