PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676749390
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 252aa    MW: 27549.8 Da    PI: 7.5035
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676749390genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.3e-18169203135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  676749390 169 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 203
                *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.1E-852251IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011410.989163199IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-15163213IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.99E-14165227No hitNo description
Gene3DG3DSA:3.30.50.108.3E-13166201IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.36E-13169215No hitNo description
PfamPF003206.9E-16169203IPR000679Zinc finger, GATA-type
PROSITE patternPS003440169194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDVYGLSSPD LLRIDDLLDF SNDEIFSSSS SSAASSSENP FNFPSSASTS FPTPPPPPSS  60
LLTDFTHDLC VPSDDAAHLE WLSRFVDDSF SDYPANPLTM TVRPEMSFTG KPRSRRSRAP  120
APSVAGTWAP MPESELCYSL AKRKPTKKLE HEAMTTVDGG GGGGSRRCCT HCASEKTPQW  180
RTGPLGPKTL CNACGVRFKS GRLVPEYRPA SSPTFVLTQH SNSHRKVMEL RRQKEQLDSS  240
SSAVHLPTFH PQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676749390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402573.11e-133GATA transcription factor 4
SwissprotO497431e-121GATA4_ARATH; GATA transcription factor 4
TrEMBLE4MXE91e-132E4MXE9_EUTHA; GATA transcription factor
TrEMBLV4NDG21e-132V4NDG2_EUTSA; GATA transcription factor
STRINGXP_006402573.11e-133(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-102GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]