PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676749492

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

C3H

Protein Properties

Length: 323aa MW: 36482.2 Da PI: 4.8871

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676749492	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	9.8e-07	61	83	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ +a+ G C++Gd C+ +Hg 676749492 61 QPICS-YAAAGDCPRGDECPHIHG 83 68999.*************99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.981	58	85	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.029	59	84	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF57850	3.81E-13	116	191	No hit	No description
Gene3D	G3DSA:3.30.40.10	6.9E-10	120	186	IPR013083	Zinc finger, RING/FYVE/PHD-type
CDD	cd00162	1.33E-4	126	186	No hit	No description
Pfam	PF00097	3.4E-7	127	184	IPR018957	Zinc finger, C3HC4 RING-type
PROSITE profile	PS50089	12.342	127	185	IPR001841	Zinc finger, RING-type
SMART	SM00184	5.5E-7	127	184	IPR001841	Zinc finger, RING-type
PROSITE pattern	PS00518	0	151	160	IPR017907	Zinc finger, RING-type, conserved site
SMART	SM00356	0.16	214	242	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.197	214	243	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MEADAASNPL ASAFVPGVPE RDLSPAPSSC LKPAWNFDSL PQDSLDEVTT FNPRTAEPED 60 QPICSYAAAG DCPRGDECPH IHGNVCPTCG KRCLHPFRPE EREEHKKLCE KKQKQLEALK 120 LSQEIECCVC LERVLSKPTP AERKFGLLTE CDHAFCIACI RNWRSSSPST GMDVNSTLRA 180 CPICRKLSYF VVPSVIWFSA PEEKKEIMDN YREKLRSIDC KHFNFGDGNC PFGTSCFYKH 240 TVKPGSYAWK YHRPPPRRPR PSRSNFSDMD TLVNMIGNII SEVEYGPIGF EDTDDDELTT 300 TDMMMLLMHM DIESEDSSDE DSY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676749492

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ903576	0.0	GQ903576.1 Arabidopsis thaliana ecotype Wassilewskija chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020881767.1	0.0	putative RING-type E3 ubiquitin transferase C3H69 isoform X1
Refseq	XP_020881768.1	0.0	putative RING-type E3 ubiquitin transferase C3H69 isoform X1
Swissprot	E0X9N4	1e-154	C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBL	A0A1J3FGX6	0.0	A0A1J3FGX6_NOCCA; Zinc finger CCCH domain-containing protein 69
TrEMBL	A0A1J3J5L1	0.0	A0A1J3J5L1_NOCCA; Zinc finger CCCH domain-containing protein 69
STRING	Bostr.3595s0001.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2944	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	1e-99	C3H family protein

Publications ? help Back to Top
Wang CT,Ho CH,Hseu MJ,Chen CM The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes. Plant Mol. Biol., 2010. 74(1-2): p. 155-66 [PMID:20652368]