PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676750136
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 304aa    MW: 33513 Da    PI: 4.9607
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676750136genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.42.3e-14200227835
       GATA   8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Tp+WR gp g+ktLCnaCG++y++ +l
  676750136 200 ATPQWRTGPMGPKTLCNACGVRYKSGRL 227
                4***********************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.2E-681281IPR016679Transcription factor, GATA, plant
SMARTSM004014.1E-6193237IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-10199225IPR013088Zinc finger, NHR/GATA-type
PfamPF003204.3E-12200227IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-10200251No hitNo description
CDDcd002021.75E-10201239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEEEAHEFFL TADHFAVDDL LVDFSNDDDD ENDVIVDSDG TNTALAVADS SNSSSFSALG  60
LPNFHSDVQD GTSFSGDLCV PSDELAELEW LSNFVEDSFS TEDVQKLQLI SGYKARPEPK  120
SEPGPENPNS SSPIFATDVS VPAKARSKRS RAAACNWASR GLLMETVYDS PFTGETILSG  180
HNLSPPTSPT SMTQLGKKQA TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPAASPTFV  240
MTKHSNSHRK VMELRRQKEM TKAHHEFIHH HHHGTDTAMM FDVSSDGDDY LIHHNVGPDF  300
RQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676750136
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054051e-106AC005405.1 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence.
GenBankCP0026881e-106CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151105.10.0PREDICTED: GATA transcription factor 12
RefseqXP_013643773.10.0GATA transcription factor 12
SwissprotP697811e-155GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A1J3FP630.0A0A1J3FP63_NOCCA; GATA transcription factor
STRINGBra009864.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-116GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]