PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751286
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NF-YA
Protein Properties Length: 447aa    MW: 50307.2 Da    PI: 9.5278
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751286genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1041.3e-32195250258
  CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                ep++VNaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF
  676751286 195 EPVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 250
                9****************************.**************************9 PP
2CBFB_NFYA33.21.7e-103523743658
  CBFB_NFYA  36 kpylheSRhkhAlrRpRgsgGrF 58 
                 pylhe Rh hAlrRpRg+gGrF
  676751286 352 SPYLHEPRHVHALRRPRGTGGRF 374
                59********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-38192253IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.879193253IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.5E-27195250IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-23196218IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860198218IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-23227250IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.0E-8276374IPR001289Nuclear transcription factor Y subunit A
SMARTSM005212.8E-4317377IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115213.373353377IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MNQKKKVVVV LMAMVVPQDR FENSLFDVMH QMNKKDSTLP YLNTSISWGV LPTEPLSLKV  60
VDATPEHVRT TKQISFHDQD SSSTQSTGQS YTEVASSGDD NPSRQISFST KSDVCLGSEE  120
TQRKGYAANP KSGSMTGFPN MQFAPTQGFS FHYADPHFGG LMAATYLPQA QTCNPQMVGM  180
VPGRVPLPVE ITETEPVFVN AKQYHAIMRR RQQRAKLEAQ NKLIKARKPY LHESRHVHAL  240
KRPRGSGGRF LNTKKLQESE QAAAKEQEHV KSVQQENRKA NMSRFEAHML QHNKDRGSTT  300
SGSDITSVSD GADIFGHTEF QFSGFPTQTN RAMLVHGQSN DMHGGGDLHH FSPYLHEPRH  360
VHALRRPRGT GGRFPNTKKL LQEPDQASVN EQEHDKSVQQ ENRKPNMSRF EAHMRQHNKD  420
RGSDITYVSE DPDIFSHTEF QVSGFPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19195254362NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751286
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390615.10.0nuclear transcription factor Y subunit A-3 isoform X1
SwissprotQ93ZH20.0NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLV4M9Q40.0V4M9Q4_EUTSA; Uncharacterized protein
STRINGXP_006390615.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-176nuclear factor Y, subunit A3