PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751308
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family LBD
Protein Properties Length: 910aa    MW: 102706 Da    PI: 8.0771
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751308genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.24.3e-367328311100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                aCaaCk++r+kC+k+C lapyfp++++k+f n+hklFG+sn++k++k l+e +r++am+ l+++A+ara dPv G+++++ +l  +++  +a+l+ l+++
  676751308 732 ACAACKYQRKKCTKNCLLAPYFPQHDQKQFLNAHKLFGVSNITKMIKGLEECQRDTAMHNLIFHANARALDPVGGVYKIMCDLDGKIKYYQAQLNFLHQQ 831
                7***********************************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.20.20.803.9E-11360397IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514454.65E-9165393IPR017853Glycoside hydrolase superfamily
PfamPF013012.4E-11570395IPR031330Glycoside hydrolase 35, catalytic domain
PRINTSPR007421.5E-447390IPR001944Glycoside hydrolase, family 35
PRINTSPR007421.5E-4494112IPR001944Glycoside hydrolase, family 35
PRINTSPR007421.5E-44149168IPR001944Glycoside hydrolase, family 35
PRINTSPR007421.5E-44205220IPR001944Glycoside hydrolase, family 35
PROSITE patternPS011820207219IPR019801Glycoside hydrolase, family 35, conserved site
PRINTSPR007421.5E-44298313IPR001944Glycoside hydrolase, family 35
PRINTSPR007421.5E-44363379IPR001944Glycoside hydrolase, family 35
SuperFamilySSF497853.4E-31535675IPR008979Galactose-binding domain-like
Gene3DG3DSA:2.60.120.2607.2E-34538674IPR008979Galactose-binding domain-like
PRINTSPR007421.5E-44628644IPR001944Glycoside hydrolase, family 35
PROSITE profilePS5089124.793731832IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-33732829IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MAKISRPSWL STGRQKRQTF VLLLVLVAVG ICVPVFALLP SLSSHHSLPP ALPRVEKMRS  60
RNFYIKDDMF WKDGKPFQII GGDLHYFRVL PEYWEDRLLR AKALGLNTIQ TYVPWNLHEP  120
KPGKLVFEGI ADIVSFIKLC QKLDLMVMLR AGPYICGEWD LGGFPVWLLA VKPPLKLRTA  180
DPAYLKLVER WWDVLLPKVF PLLFSNGGPL IMFQIENEYG SYGNDKAYLR NLVTMATGHL  240
GNDIIVYTTD GGTRETLQKG TVPLYDVYAA VDFTTGDDPW PIFELQKKFN APGKSPPLSS  300
EFYTGWLTHW GEKIAKTDAE FTADSLEKIL SRNGSAVLYM VHGGTNFGFY NGANTGSEEF  360
DYKPDLTSYD YDAPIKESGD IDNPKFRALQ RVIKKYNAAP HPITPSTKNR KAYGPIKMQR  420
TRSLFDIVSM TDPVDVISSA NPVSMESAGQ LKHFLTHHEM MFGFLLYESS YIAKQSGNVL  480
RIPKVHDRAQ VFVSCLSQDN DVGTPRYIGT TERWNNQPVS IPTTECTSNT SLFILVENMG  540
RVNYGPYIFD EKGILSSVYL DGKILHGWKM IPIPFHNLNQ VPYLSFEMQH TKKRNLGQKE  600
PAMFAGEFSI NSVEEIKDTY LSFNGWGKGV AFVNKFNIGR YWPSVGPQCN LYVPAPLLKP  660
GQNSVVIFEL ESPHLELLLE AVDREDFTCG SNASKVKSVA AVQSCSSCVW LPHTTLIKNK  720
LQGGSSSPSA TACAACKYQR KKCTKNCLLA PYFPQHDQKQ FLNAHKLFGV SNITKMIKGL  780
EECQRDTAMH NLIFHANARA LDPVGGVYKI MCDLDGKIKY YQAQLNFLHQ QVAMCRALAQ  840
QQMHGGCSYG DLLEQGEDCY DYQKVEHHQQ SSLNYETFLE IPEQPSKVKR EKEGIFDPEQ  900
NNLLSQIQII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mad_A1e-1496767421582Beta-galactosidase
4mad_B1e-1496767421582Beta-galactosidase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751308
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0581980.0AY058198.1 Arabidopsis thaliana At1g72990/F3N23_19 mRNA, complete cds.
GenBankAY1420080.0AY142008.1 Arabidopsis thaliana At1g72990/F3N23_19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013701416.10.0beta-galactosidase 17-like
SwissprotQ93Z240.0BGA17_ARATH; Beta-galactosidase 17
TrEMBLA0A078F9I80.0A0A078F9I8_BRANA; Beta-galactosidase
STRINGBo6g088130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM807722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.14e-57LOB domain-containing protein 7
Publications ? help Back to Top
  1. Iglesias N, et al.
    Apoplastic glycosidases active against xyloglucan oligosaccharides of Arabidopsis thaliana.
    Plant Cell Physiol., 2006. 47(1): p. 55-63
    [PMID:16267099]
  2. Ahn YO, et al.
    Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 35.
    Phytochemistry, 2007. 68(11): p. 1510-20
    [PMID:17466346]
  3. Chandrasekar B,van der Hoorn RA
    Beta galactosidases in Arabidopsis and tomato - a mini review.
    Biochem. Soc. Trans., 2016. 44(1): p. 150-8
    [PMID:26862200]