PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676751824

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

M-type_MADS

Protein Properties

Length: 229aa MW: 25930.6 Da PI: 8.0422

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676751824	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.8	2.5e-22	50	98	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i ++s+rqvtfskRr+g++KKA ELSvL +a++ +i fs +g++y + 676751824 50 KQITEESRRQVTFSKRRKGLFKKAAELSVLSGAQIGIITFSRRGRIYSF 98 68999******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.034	42	102	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.0E-27	42	101	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.06E-23	43	117	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-20	44	64	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-21	52	98	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-20	64	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-20	79	100	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MEDGEASSTI YLPFTEQNPL QIPKVPVNKK EETKLQNPKT TKGRQKIEIK QITEESRRQV 60 TFSKRRKGLF KKAAELSVLS GAQIGIITFS RRGRIYSFGN VDTLIEKYFR KTPVTLKSHP 120 GGDETNQLED VDGIKWWERA VENVPEEEMG EYMTALSGLR ENLWTRICQL GGDRLVLMNA 180 PALPNPMAAI EWKMMDENLT VKNDHQGQAG NDGCIDFAGV PFLSQNCRQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676751824

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013699573.1	1e-106	MADS-box transcription factor 23-like
TrEMBL	A0A0D3D038	1e-103	A0A0D3D038_BRAOL; Uncharacterized protein
STRING	Bo6g115840.1	1e-104	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4697	20	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72350.1	3e-85	M-type_MADS family protein