PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751826
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 221aa    MW: 24929.3 Da    PI: 8.3152
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751826genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.23.7e-225098149
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               k i+++ +rqvtfskRr+g++KKA ELSvLC+a++ +i fs   ++y +
  676751826 50 KEIKEENRRQVTFSKRRTGLFKKAAELSVLCGAQIGIITFSRCERIYAF 98
               6799**************************************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.62E-2342113IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.17542102IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-2642101IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-204464IPR002100Transcription factor, MADS-box
PfamPF003191.0E-215298IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-206479IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-2079100IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEDGEDSSTS CLPFTEQKPL QKLNFRVKQH KETKLQNPKT TKGRQKIEIK EIKEENRRQV  60
TFSKRRTGLF KKAAELSVLC GAQIGIITFS RCERIYAFGN VDTLIEKYLR KSPVMLRSHS  120
GGDVATGGAD EDGRMWWERA VESVPEEEME EYMKGLSGLR DKLWTRICAI GGTDPTAQVN  180
APAFPNLMAP VDWKITDQGQ AGHDGYLDFA AVPFLSQNSR Q
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751826
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589514.11e-113PREDICTED: MADS-box transcription factor 57-like
RefseqXP_013690325.11e-113MADS-box transcription factor 57
TrEMBLA0A078IML81e-112A0A078IML8_BRANA; BnaC06g24370D protein
TrEMBLA0A0D3CX451e-112A0A0D3CX45_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QC051e-112A0A3N6QC05_BRACR; Uncharacterized protein
TrEMBLA0A3P6FXM61e-112A0A3P6FXM6_BRAOL; Uncharacterized protein
STRINGBo6g091550.11e-113(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.11e-74M-type_MADS family protein