PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751894
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 460aa    MW: 51227.7 Da    PI: 6.3086
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751894genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.9e-16297348155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  676751894 297 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 348
                57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.954183262IPR001471AP2/ERF domain
SMARTSM003808.0E-4212268IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-7230263IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-7233262IPR001471AP2/ERF domain
CDDcd000182.43E-12297356No hitNo description
PfamPF008472.9E-10297348IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-18297357IPR016177DNA-binding domain
PROSITE profilePS5103219.203298356IPR001471AP2/ERF domain
SMARTSM003806.8E-32298362IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18298356IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MANWLTFSLS PDQSHFVTYD DSSTPYLIDN FYVLKEEAAS MEDSTSIASF FDTQTHSHVP  60
KLEDFLGNQT ETQQDSSSLP QIYDPRHHSG FKTVACFQTN STSEIEVLGG GDAVAGELDG  120
CTSEGALSLA VNNSDRPLSC DGGERGGNSK KRTVSKKETK AVEPSSDESK KKVSETFGQR  180
TSIYRDIDGR EDMKRIYGIT AVGGKVKPEK DVRFYQIDMS SLTKDVHFDW HKGGYDKEDK  240
AARAYDLAAL KYWGPSATTN FQIASYSKEM EEMNHMTKQE FIASIRRKSS GFSRGASIYR  300
GVTRHHQQGR WQARIGRVAG NKDLYLGTFA TEEEAAEAYD IAAIKFRGTN AVTNFEMNRY  360
DVEAVMKSSF PVGGGAAKRH KLSLESPPPS SDDHKLQQHL PPSSSPNLGP SSIPCGIPFD  420
SSVLYHHQNF FQHYPSVPDP TTFQVPMNQA EFFLWPNQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751894
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534040.0AK353404.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-G24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024007164.10.0AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ6J9N81e-177AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBLV4KMZ10.0V4KMZ1_EUTSA; Uncharacterized protein
STRINGXP_006394021.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65510.11e-171AINTEGUMENTA-like 7
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]